WormBase Tree Display for Gene: WBGene00001481
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| WBGene00001481 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y54E10A | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | fog-1 | Person_evidence | WBPerson261 | |||||
| Sequence_name | Y54E10A.4 | ||||||||
| Molecular_name (13) | |||||||||
| Other_name | cpb-4 | ||||||||
| CELE_Y54E10A.4 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | fog-1 | ||||||||
| DB_info | Database | AceView | gene | 1D785 | |||||
| WormQTL | gene | WBGene00001481 | |||||||
| WormFlux | gene | WBGene00001481 | |||||||
| NDB | locus_tag | CELE_Y54E10A.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001481|UniProtKB=G5EBS6 | |||||||
| family | PTHR12566 | ||||||||
| NCBI | gene | 171895 | |||||||
| RefSeq | protein | NM_001313541.3 | |||||||
| NM_001313540.3 | |||||||||
| NM_001381585.1 | |||||||||
| NM_001381586.3 | |||||||||
| TREEFAM | TREEFAM_ID | TF317658 | |||||||
| TrEMBL | UniProtAcc | A0A0K3ATT1 | |||||||
| G5EBS6 | |||||||||
| Q95XX9 | |||||||||
| A0A0K3AQU4 | |||||||||
| UniProt_GCRP | UniProtAcc | G5EBS6 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:24 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | fog | ||||||||
| Reference_allele | WBVar00144581 | ||||||||
| Allele (139) | |||||||||
| Possibly_affected_by | WBVar02158428 | ||||||||
| Legacy_information | e1959sd : homozygous XX animals transformed into fertile females; homozygous and heterozygous XO animals are somatically male with both sperm and oocytes in germline. ES2 (adults). NA3. | ||||||||
| See also e1959 | |||||||||
| [C.elegansII] e1959sd : homozygous XX animals transformed into fertile females; homozygous XO animals are somatically male, make oocytes in germ line; heterozygous XO animals are somatically male with both sperm and oocytes in germline. ES2 (adults). OA>10: e2121, e1959, e2122, q155, q253ts (fertile at 15C). [Barton and Kimble 1990; Ellis and Kimble 1995; JK; RE] | |||||||||
| Strain | WBStrain00022517 | ||||||||
| WBStrain00022535 | |||||||||
| WBStrain00022541 | |||||||||
| WBStrain00022595 | |||||||||
| WBStrain00022628 | |||||||||
| WBStrain00022633 | |||||||||
| WBStrain00022660 | |||||||||
| WBStrain00022661 | |||||||||
| WBStrain00004543 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (26) | |||||||||
| Ortholog (37) | |||||||||
| Paralog | WBGene00000770 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000771 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000772 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | fog-1 encodes a cytoplasmic polyadenylation element binding (CPEB) protein; FOG-1 is required for specification of the sperm fate; FOG-1 binds its own 3'-UTR and fog-1 expression is directly regulated by FBF-1 and FBF-2. | Paper_evidence | WBPaper00004396 | |||||
| WBPaper00005045 | |||||||||
| WBPaper00026645 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 11 Apr 2014 00:00:00 | ||||||||
| Automated_description | Enables mRNA 3'-UTR binding activity. Involved in cell fate specification; germ-line sex determination; and spermatogenesis. Located in cytoplasm and nuclear periphery. Expressed in germ line. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y54E10A.4a | |||||||
| Y54E10A.4b | |||||||||
| Y54E10A.4c | |||||||||
| Y54E10A.4d | |||||||||
| Corresponding_transcript | Y54E10A.4a.1 | ||||||||
| Y54E10A.4a.2 | |||||||||
| Y54E10A.4b.1 | |||||||||
| Y54E10A.4c.1 | |||||||||
| Y54E10A.4d.1 | |||||||||
| Other_sequence | CRC04533_1 | ||||||||
| MH07524 | |||||||||
| Associated_feature | WBsf028075 | ||||||||
| WBsf643133 | |||||||||
| WBsf656105 | |||||||||
| WBsf656106 | |||||||||
| WBsf217376 | |||||||||
| WBsf217377 | |||||||||
| Experimental_info | RNAi_result (15) | ||||||||
| Expr_pattern (11) | |||||||||
| Construct_product | WBCnstr00022307 | ||||||||
| Regulate_expr_cluster | WBPaper00048762:FOG-1_associated | ||||||||
| Antibody | WBAntibody00000874 | ||||||||
| WBAntibody00000966 | |||||||||
| Microarray_results | SMD_Y54E10A_156.D | ||||||||
| 177117_at | |||||||||
| A_12_P145725 | |||||||||
| A_12_P145726 | |||||||||
| Aff_Y54E10A_156.D | |||||||||
| GPL13394_WBGene00001481 | |||||||||
| GPL13914_Y54E10A.4 | |||||||||
| GPL14144_Y54E10A.4b_1017-1076_0.889_38_C | |||||||||
| GPL14144_Y54E10A.4b_1110-1169_0.903_29_A | |||||||||
| GPL14144_Y54E10A.4b_1236-1295_0.886_40_B | |||||||||
| GPL19516_CGZ0049017 | |||||||||
| GPL19516_CGZ0049018 | |||||||||
| GPL21109_Y54E10A.4a | |||||||||
| GPL3518_CE27479 | |||||||||
| GPL3518_CE27480 | |||||||||
| GPL8304_CE_WBGene00001481_A | |||||||||
| GPL8304_CE_WBGene00001481_B | |||||||||
| GPL8673_Y54E10A_4aP00089 | |||||||||
| GPL8673_Y54E10A_4aP00573 | |||||||||
| GPL8673_Y54E10A_4aP01045 | |||||||||
| GPL8673_Y54E10A_4bP00364 | |||||||||
| GPL8673_Y54E10A_4bP00475 | |||||||||
| GPL8673_Y54E10A_4bP00544 | |||||||||
| GPL9450_Y54E10A.4a | |||||||||
| GPL9450_Y54E10A.4b | |||||||||
| cea2.d.07001 | |||||||||
| cea2.d.45063 | |||||||||
| Expression_cluster (148) | |||||||||
| Interaction (73) | |||||||||
| Map_info | Map | I | Position | -4.47297 | Error | 0.001409 | |||
| Well_ordered | |||||||||
| Positive | Positive_clone | Y54E10A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Negative | Outside_rearr | sDf4 | |||||||
| Mapping_data | 2_point | 2502 | |||||||
| Multi_point (19) | |||||||||
| Pos_neg_data | 3183 | ||||||||
| 8068 | |||||||||
| 5693 | |||||||||
| 6211 | |||||||||
| 6228 | |||||||||
| 6566 | |||||||||
| 6627 | |||||||||
| 8064 | |||||||||
| 8533 | |||||||||
| Reference (141) | |||||||||
| Picture | WBPicture0000013095 | ||||||||
| Method | Gene |
