WormBase Tree Display for Variation: WBVar00144581
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| WBVar00144581 | Evidence | Paper_evidence | WBPaper00005045 | ||
|---|---|---|---|---|---|
| Name | Public_name | e2121 | |||
| Other_name | CE27480:p.Gln552Ter | ||||
| CE50219:p.Gln8Ter | |||||
| Y54E10A.4d.1:c.22C>T | |||||
| Y54E10A.4b.1:c.1654C>T | |||||
| Y54E10A.4c.1:c.847C>T | |||||
| CE50301:p.Gln283Ter | |||||
| CE27479:p.Gln338Ter | |||||
| Y54E10A.4a.2:c.1012C>T | |||||
| Y54E10A.4a.1:c.1012C>T | |||||
| HGVSg | CHROMOSOME_I:g.3216815C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | Y54E10A | |
| Flanking_sequences | caggtccgaatgaatccagaagccaaactc | aacagttcctacgcatgaaacgtaccaacg | |||
| Mapping_target | Y54E10A | ||||
| Type_of_mutation | Substitution | c | t | ||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004543 | ||||
| Laboratory | CB | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00001481 | |||
| Transcript | Y54E10A.4d.1 | VEP_consequence | stop_gained | ||
| VEP_impact | HIGH | ||||
| HGVSc | Y54E10A.4d.1:c.22C>T | ||||
| HGVSp | CE50219:p.Gln8Ter | ||||
| cDNA_position | 22 | ||||
| CDS_position | 22 | ||||
| Protein_position | 8 | ||||
| Exon_number | 1/1 | ||||
| Codon_change | Caa/Taa | ||||
| Amino_acid_change | Q/* | ||||
| Y54E10A.4a.1 | VEP_consequence | stop_gained | |||
| VEP_impact | HIGH | ||||
| HGVSc | Y54E10A.4a.1:c.1012C>T | ||||
| HGVSp | CE27479:p.Gln338Ter | ||||
| cDNA_position | 1666 | ||||
| CDS_position | 1012 | ||||
| Protein_position | 338 | ||||
| Exon_number | 10/11 | ||||
| Codon_change | Caa/Taa | ||||
| Amino_acid_change | Q/* | ||||
| Y54E10A.4c.1 | VEP_consequence | stop_gained | |||
| VEP_impact | HIGH | ||||
| HGVSc | Y54E10A.4c.1:c.847C>T | ||||
| HGVSp | CE50301:p.Gln283Ter | ||||
| cDNA_position | 847 | ||||
| CDS_position | 847 | ||||
| Protein_position | 283 | ||||
| Exon_number | 4/4 | ||||
| Codon_change | Caa/Taa | ||||
| Amino_acid_change | Q/* | ||||
| Y54E10A.4b.1 | VEP_consequence | stop_gained | |||
| VEP_impact | HIGH | ||||
| HGVSc | Y54E10A.4b.1:c.1654C>T | ||||
| HGVSp | CE27480:p.Gln552Ter | ||||
| cDNA_position | 1666 | ||||
| CDS_position | 1654 | ||||
| Protein_position | 552 | ||||
| Exon_number | 10/10 | ||||
| Codon_change | Caa/Taa | ||||
| Amino_acid_change | Q/* | ||||
| Y54E10A.4a.2 | VEP_consequence | stop_gained | |||
| VEP_impact | HIGH | ||||
| HGVSc | Y54E10A.4a.2:c.1012C>T | ||||
| HGVSp | CE27479:p.Gln338Ter | ||||
| cDNA_position | 1140 | ||||
| CDS_position | 1012 | ||||
| Protein_position | 338 | ||||
| Exon_number | 6/7 | ||||
| Codon_change | Caa/Taa | ||||
| Amino_acid_change | Q/* | ||||
| Interactor | WBInteraction000524766 | ||||
| WBInteraction000524773 | |||||
| WBInteraction000524789 | |||||
| Isolation | Mutagen | EMS | |||
| Genetics | Interpolated_map_position | I | -4.46985 | ||
| Mapping_data | In_multi_point | 2040 | |||
| 2784 | |||||
| 3030 | |||||
| 3276 | |||||
| In_pos_neg_data | 3183 | ||||
| 8068 | |||||
| Reference | WBPaper00022404 | ||||
| WBPaper00015489 | |||||
| Method | Substitution_allele |
