WormBase Tree Display for Gene: WBGene00001479
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| WBGene00001479 | SMap | S_parent | Sequence | F53F4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | fmo-4 | |||||||
| Sequence_name | F53F4.5 | ||||||||
| Molecular_name | F53F4.5a | ||||||||
| F53F4.5a.1 | |||||||||
| CE30676 | |||||||||
| F53F4.5b | |||||||||
| Other_name | fmo-14 | Person_evidence | WBPerson3011 | ||||||
| CELE_F53F4.5 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | fmo-4 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:24 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 20 Sep 2004 14:56:48 | WBPerson1971 | Name_change | CGC_name | fmo-14 -> fmo-4 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | fmo | ||||||||
| Allele (47) | |||||||||
| Strain | WBStrain00031354 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Ortholog (54) | |||||||||
| Paralog | WBGene00001476 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00001477 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001478 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001480 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00007254 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00016728 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | fmo-4 encodes a flavin-containing monoxygenase homologous to human FMO1, FMO2, and FMO3 (OMIM:602079, mutated in trimethylaminuria). | Paper_evidence | WBPaper00004637 | |||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 16 May 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable monooxygenase activity. Predicted to be involved in lipid metabolic process. Predicted to be located in endoplasmic reticulum membrane. Expressed in excretory duct cell; excretory socket cell; hypodermal cell; intestine; and ventral nerve cord. Human ortholog(s) of this gene implicated in hypertension and trimethylaminuria. Is an ortholog of several human genes including FMO2 (flavin containing dimethylaniline monoxygenase 2); FMO3 (flavin containing dimethylaniline monoxygenase 3); and FMO4 (flavin containing dimethylaniline monoxygenase 4). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0080361 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:3771) | ||||
| DOID:655 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:3771) | ||||||
| DOID:10763 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:3771) | ||||||
| Molecular_info | Corresponding_CDS | F53F4.5a | |||||||
| Corresponding_CDS_history | F53F4.5:wp78 | ||||||||
| Corresponding_transcript | F53F4.5b | ||||||||
| F53F4.5a.1 | |||||||||
| Other_sequence (33) | |||||||||
| Associated_feature | WBsf653326 | ||||||||
| WBsf653327 | |||||||||
| WBsf668638 | |||||||||
| WBsf717273 | |||||||||
| WBsf1020743 | |||||||||
| WBsf234826 | |||||||||
| WBsf234827 | |||||||||
| WBsf234828 | |||||||||
| WBsf234829 | |||||||||
| WBsf234830 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00061322 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00114740 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00081537 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00081487 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048155 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015527 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00081512 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032707 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00098199 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001191 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr3221 | ||||||||
| Expr6160 | |||||||||
| Expr12890 | |||||||||
| Expr13433 | |||||||||
| Expr1014325 | |||||||||
| Expr1030882 | |||||||||
| Expr1151968 | |||||||||
| Expr2011859 | |||||||||
| Expr2030097 | |||||||||
| Drives_construct | WBCnstr00003696 | ||||||||
| WBCnstr00011232 | |||||||||
| WBCnstr00023040 | |||||||||
| WBCnstr00036920 | |||||||||
| Construct_product | WBCnstr00023040 | ||||||||
| WBCnstr00036920 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (242) | |||||||||
| Interaction | WBInteraction000549464 | ||||||||
| WBInteraction000571153 | |||||||||
| Map_info | Map | V | Position | 5.5143 | Error | 0.013631 | |||
| Positive | Positive_clone | F53F4 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4176 | |||||||
| 4324 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00025133 | ||||||||
| WBPaper00026596 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049392 | |||||||||
| WBPaper00052994 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00062682 | |||||||||
| Remark | Sequence connection from [Barstead RJ] [040902 ck1] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| This gene has been renamed with approval of the CGC (fmo-14->fmo-4) | Person_evidence | WBPerson3011 | |||||||
| Method | Gene |
