WormBase Tree Display for Gene: WBGene00001478
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| WBGene00001478 | SMap | S_parent | Sequence | Y39A1A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | fmo-3 | |||||||
| Sequence_name | Y39A1A.19 | ||||||||
| Molecular_name | Y39A1A.19a | ||||||||
| Y39A1A.19a.1 | |||||||||
| CE19139 | |||||||||
| Y39A1A.19b | |||||||||
| CE52017 | |||||||||
| Y39A1A.19b.1 | |||||||||
| Y39A1A.19b.2 | |||||||||
| Y39A1A.19b.3 | |||||||||
| Other_name | fmo-13 | Person_evidence | WBPerson3011 | ||||||
| CELE_Y39A1A.19 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | fmo-3 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:24 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 20 Sep 2004 14:56:48 | WBPerson1971 | Name_change | CGC_name | fmo-13 -> fmo-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | fmo | ||||||||
| Allele (83) | |||||||||
| Strain | WBStrain00003299 | ||||||||
| WBStrain00031424 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (17) | |||||||||
| Ortholog (68) | |||||||||
| Paralog | WBGene00001476 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001477 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001480 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001479 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00007254 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00016728 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | fmo-3 encodes a flavin-containing monoxygenase homologous to human FMO1, FMO2, and FMO3 (OMIM:602079, mutated in trimethylaminuria). | Paper_evidence | WBPaper00004637 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 16 May 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable monooxygenase activity. Predicted to be involved in lipid metabolic process. Predicted to be located in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in hypertension and trimethylaminuria. Is an ortholog of several human genes including FMO2 (flavin containing dimethylaniline monoxygenase 2); FMO3 (flavin containing dimethylaniline monoxygenase 3); and FMO4 (flavin containing dimethylaniline monoxygenase 4). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0080361 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:3771) | ||||
| DOID:655 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:3771) | ||||||
| DOID:10763 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:3771) | ||||||
| Molecular_info | Corresponding_CDS | Y39A1A.19a | |||||||
| Y39A1A.19b | |||||||||
| Corresponding_transcript | Y39A1A.19a.1 | ||||||||
| Y39A1A.19b.1 | |||||||||
| Y39A1A.19b.2 | |||||||||
| Y39A1A.19b.3 | |||||||||
| Other_sequence (22) | |||||||||
| Associated_feature | WBsf645576 | ||||||||
| WBsf994119 | |||||||||
| WBsf994120 | |||||||||
| WBsf225749 | |||||||||
| WBsf225750 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00061321 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00056103 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001292 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00006898 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00006965 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056102 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr3220 | ||||||||
| Expr6942 | |||||||||
| Expr1015071 | |||||||||
| Expr1030881 | |||||||||
| Expr1159623 | |||||||||
| Expr2011858 | |||||||||
| Expr2030096 | |||||||||
| Drives_construct | WBCnstr00003770 | ||||||||
| WBCnstr00011231 | |||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (193) | |||||||||
| Interaction (14) | |||||||||
| Map_info | Map | III | Position | 4.48273 | Error | 0.08872 | |||
| Positive | Positive_clone | Y39A1A | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4323 | |||||||
| 5025 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00025133 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00052994 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061133 | |||||||||
| WBPaper00064375 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| This gene has been renamed with approval of the CGC (fmo-13->fmo-3) | Person_evidence | WBPerson3011 | |||||||
| Method | Gene |
