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WormBase Tree Display for Gene: WBGene00001403

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Name Class

WBGene00001403EvidencePaper_evidenceWBPaper00003411
SMapS_parentSequenceCHROMOSOME_IV
IdentityVersion1
NameCGC_namefbl-1
Sequence_nameF56H11.1
Molecular_name (24)
Other_nameFBLN1Accession_evidenceEMBLAF051401
CELE_F56H11.1Accession_evidenceNDBBX284604
Public_namefbl-1
DB_infoDatabaseAceViewgene4K309
WormQTLgeneWBGene00001403
WormFluxgeneWBGene00001403
NDBlocus_tagCELE_F56H11.1
PanthergeneCAEEL|WormBase=WBGene00001403|UniProtKB=O77469
familyPTHR24039
NCBIgene177788
RefSeqproteinNM_001306946.3
NM_001306950.3
NM_001028066.6
NM_001306947.3
NM_001306948.3
NM_001028065.4
NM_069293.6
NM_001306949.2
SwissProtUniProtAccO77469
TrEMBLUniProtAccA0A061ADQ1
A0A061AKL1
A0A061AIV4
A0A061ACF5
A0A061ACI3
UniProt_GCRPUniProtAccO77469
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:24WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classfbl
Allele (63)
StrainWBStrain00022622
WBStrain00028706
WBStrain00028707
WBStrain00028708
WBStrain00035944
WBStrain00003953
WBStrain00050790
WBStrain00054900
RNASeq_FPKM (74)
GO_annotation (12)
OrthologWBGene00070281Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00074160Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WBGene00039129Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00154017Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00097135Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WBGene00120533Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00192739Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00129530Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00191245Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00193550Caenorhabditis brenneriFrom_analysisWormBase-Compara
CBOVI.g7899Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP26.g18391Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g21149Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g8105Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g20280Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g12887Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g14689Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP39.g19974Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g26790Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
Cang_2012_03_13_03985.g18525Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_13471.g24239Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_19718.g26306Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_IV.g13222Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_V.g20337Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp5_scaffold_04921.g34050Caenorhabditis sinicaFrom_analysisWormBase-Compara
GCK72_013463Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g02983Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g10715Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g2485Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_40341800Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g11345Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00242159Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00244546Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00090159Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00256314Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00302703Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0051999Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-990415-73Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
HGNC:3600Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
HGNC:3601Homo sapiensFrom_analysisOrthoInspector
Panther
SonicParanoid
MGI:95487Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
MGI:95488Mus musculusFrom_analysisOrthoInspector
Panther
SonicParanoid
RGD:628685Rattus norvegicusFrom_analysisOrthoInspector
Panther
SonicParanoid
RGD:1308667Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
Structured_descriptionConcise_descriptionfbl-1 encodes proteins orthologous to the vertebrate basement membrane protein fibulin; fbl-1 activity is essential for gonad and body morphology, as well as for reproduction; fbl-1 interacts genetically with gon-1 and mig-17, which encode ADAMTS metalloproteases essential for gonad development; the FBL-1C isoform is expressed in anterior and posterior intestinal cells and localizes to the gonad and pharyngeal basement membranes; the FBL-1D isoform is expressed in some head and tail body wall muscle cells.Paper_evidenceWBPaper00003411
WBPaper00003910
WBPaper00005654
WBPaper00024609
WBPaper00024610
Curator_confirmedWBPerson1843
WBPerson567
Date_last_updated11 Dec 2014 00:00:00
Automated_descriptionAn extracellular matrix structural constituent. Involved in extracellular matrix organization; positive regulation of locomotion; and protein localization. Located in basement membrane. Expressed in ALM; GLR; basal lamina; hyp7 syncytium; and nerve ring. Is an ortholog of human FBLN1 (fibulin 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF56H11.1a
F56H11.1b
F56H11.1c
F56H11.1d
F56H11.1e
F56H11.1f
F56H11.1g
F56H11.1h
Corresponding_CDS_historyF56H11.1:wp39
F56H11.1c:wp141
Corresponding_transcriptF56H11.1a.1
F56H11.1b.1
F56H11.1c.1
F56H11.1d.1
F56H11.1e.1
F56H11.1f.1
F56H11.1g.1
F56H11.1h.1
Other_sequence (29)
Associated_featureWBsf655044
WBsf655045
WBsf997438
WBsf228843
WBsf228844
Experimental_infoRNAi_resultWBRNAi00062661Inferred_automaticallyRNAi_primary
WBRNAi00048771Inferred_automaticallyRNAi_primary
WBRNAi00116170Inferred_automaticallyRNAi_primary
WBRNAi00027780Inferred_automaticallyRNAi_primary
WBRNAi00048773Inferred_automaticallyRNAi_primary
WBRNAi00015848Inferred_automaticallyRNAi_primary
WBRNAi00110311Inferred_automaticallyRNAi_primary
WBRNAi00018168Inferred_automaticallyRNAi_primary
WBRNAi00048772Inferred_automaticallyRNAi_primary
Expr_pattern (13)
Drives_constructWBCnstr00003660
WBCnstr00011182
WBCnstr00011223
WBCnstr00011224
WBCnstr00011594
WBCnstr00011920
WBCnstr00036967
Construct_productWBCnstr00011182
WBCnstr00011224
WBCnstr00011920
WBCnstr00036967
Microarray_results (40)
Expression_cluster (205)
Interaction (64)
Map_infoMapIVPosition4.30419Error0.002555
PositivePositive_cloneF56H11Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Mapping_dataMulti_point4280
Pseudo_map_position
ReferenceWBPaper00003411
WBPaper00010142
WBPaper00024609
WBPaper00024610
WBPaper00025344
WBPaper00026140
WBPaper00026601
WBPaper00026765
WBPaper00027231
WBPaper00027713
WBPaper00028589
WBPaper00028615
WBPaper00029033
WBPaper00030634
WBPaper00030676
WBPaper00032451
WBPaper00037071
WBPaper00038491
WBPaper00040382
WBPaper00040598
WBPaper00041569
WBPaper00043346
WBPaper00044520
WBPaper00045753
WBPaper00046103
WBPaper00049351
WBPaper00055090
WBPaper00060691
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene