WormBase Tree Display for Gene: WBGene00090159
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| WBGene00090159 | SMap | S_parent | Sequence | PPA_ChrIII | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 8 | |||||||
| Name | CGC_name | Ppa-nipi-4 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA00605 | ||||||||
| Molecular_name | PPA00605 | ||||||||
| PPA00605.1 | |||||||||
| PP63937 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000067330 | ||||||||
| GENEPREDICTION_SNAP300000067333 | |||||||||
| UMM-S50-39.24 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-nipi-4 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:03 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 12 Apr 2012 16:41:36 | WBPerson2970 | Name_change | CGC_name | Ppa-nipi-4 | ||||
| 3 | 24 Nov 2017 09:46:48 | WBPerson4055 | Event | Acquires_merge | WBGene00090162 | ||||
| 4 | 24 Nov 2017 09:46:52 | WBPerson4055 | Event | Acquires_merge | WBGene00205882 | ||||
| 5 | 20 Mar 2018 10:26:13 | WBPerson4025 | Name_change | CGC_name | Removed | ||||
| 6 | 08 Feb 2019 15:42:26 | WBPerson1983 | Name_change | CGC_name | Ppa-nipi-4 | ||||
| 7 | 08 May 2019 10:09:28 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 8 | 28 May 2021 19:05:19 | WBPerson1983 | Name_change | CGC_name | Ppa-nipi-4 | ||||
| Acquires_merge | WBGene00090162 | ||||||||
| WBGene00205882 | |||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nipi | ||||||||
| RNASeq_FPKM | WBls:0000032 | 0.691232 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 0.691232 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
| 0.774601 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
| 1.63257 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| GO_annotation | 00173361 | ||||||||
| 00173362 | |||||||||
| 00173363 | |||||||||
| 00173364 | |||||||||
| 00173365 | |||||||||
| Ortholog (38) | |||||||||
| Structured_description | Automated_description | Predicted to enable calcium ion binding activity and protein tyrosine kinase activity. Predicted to be involved in cell-matrix adhesion. Is an ortholog of C. elegans nipi-4. In C. elegans, nipi-4 is involved in defense response to fungus; positive regulation of gene expression; and response to wounding. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA00605 | |||||||
| Corresponding_transcript | PPA00605.1 | ||||||||
| Other_sequence | OVC06001_1 | ||||||||
| JI177701.1 | |||||||||
| RSC03437_1 | |||||||||
| CRC01755_1 | |||||||||
| CR08248 | |||||||||
| JI165621.1 | |||||||||
| RS09998 | |||||||||
| AW739486.1 | |||||||||
| JI471061.1 | |||||||||
| Experimental_info | Microarray_results (16) | ||||||||
| Remark | [180319 gw3] The CGC name Ppa-nipi-4 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson4025 | ||||||
| [190507 pad] The CGC name Ppa-nipi-4 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
