WormBase Tree Display for Gene: WBGene00001387
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WBGene00001387 | Evidence | Paper_evidence | WBPaper00005754 | ||||
---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F15B9 | ||||
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | far | ||||||
Allele (13) | |||||||
Strain | WBStrain00036364 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00108644 | ||||||
Ortholog (27) | |||||||
Paralog | WBGene00001385 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | |||||||
WBGene00001386 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00001391 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00001389 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00001390 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00001388 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00015578 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00001392 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
Structured_description | Automated_description | Predicted to enable lipid binding activity. Predicted to be located in extracellular region. Expressed in vulva and in male. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F15B9.1 | |||||
Corresponding_transcript | F15B9.1.1 | ||||||
Other_sequence (20) | |||||||
Associated_feature | WBsf653275 | ||||||
WBsf669538 | |||||||
WBsf234760 | |||||||
WBsf234761 | |||||||
Experimental_info | RNAi_result | WBRNAi00013357 | Inferred_automatically | RNAi_primary | |||
WBRNAi00044695 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern (11) | |||||||
Drives_construct | WBCnstr00003728 | ||||||
WBCnstr00011727 | |||||||
WBCnstr00013187 | |||||||
WBCnstr00022266 | |||||||
WBCnstr00036981 | |||||||
Construct_product | WBCnstr00036981 | ||||||
Microarray_results (18) | |||||||
Expression_cluster (430) | |||||||
Interaction | WBInteraction000133999 | ||||||
WBInteraction000134000 | |||||||
WBInteraction000135516 | |||||||
WBInteraction000136831 | |||||||
WBInteraction000503619 | |||||||
WBInteraction000552048 | |||||||
WBInteraction000571827 | |||||||
WBInteraction000579990 | |||||||
WBProcess | WBbiopr:00000121 | ||||||
Map_info | Map | V | Position | 4.79254 | Error | 0.004559 | |
Positive | Positive_clone | F15B9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 4294 | |||||
4295 | |||||||
4296 | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00005356 | ||||||
WBPaper00005754 | |||||||
WBPaper00026629 | |||||||
WBPaper00028789 | |||||||
WBPaper00032031 | |||||||
WBPaper00062002 | |||||||
WBPaper00062388 | |||||||
WBPaper00064370 | |||||||
Remark | [Jan Bradley] We have tested fatty acid and retinol binding of 3 of far-1 to far-6; all are expressed and we have assumed the others are able to bind fatty acids based on sequence similarity. There is a slight problem with the gene finder/genome sequence of F15B9.3 as it predicts the far-5 gene to be continuous with the c terminal of a lag-2 gene. We've tried v hard to see if the whole lag 2/far gene is transcribed and it doesn't seem to be but we can find an sl-far gene transcript with specific primers for the c terminal. | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |