WormBase Tree Display for Gene: WBGene00001229

WBGene00001229 Evidence: Person_evidence: WBPerson599
  SMap: S_parent: Sequence: D2013
  Identity: Version: 1
    Name: CGC_name: eif-3.F
      Sequence_name: D2013.7
      Molecular_name: D2013.7
        D2013.7.1
        CE00932
      Other_name: CELE_D2013.7 Accession_evidence: NDB BX284602
      Public_name: eif-3.F
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:23 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: eif
    Allele (32)
    RNASeq_FPKM (74)
    GO_annotation (19)
    Contained_in_operon: CEOP2424
    Ortholog: WBGene00062271 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00039262 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            WormBase-Compara
      WBGene00139321 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00182606 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00093685 Pristionchus pacificus From_analysis: Inparanoid_8
      WBGene00223294 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g6769 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g6122 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g5761 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g14354 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g21957 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g16697 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g4200 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g16093 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g8161 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g1696 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00753.g13885 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-eif-3.F Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold562.g3946 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00982.g17299 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_15823 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_004725 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g08588 Oscheius tipulae From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g13978 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g8227 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20301810 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g5456 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00247425 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00262429 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00289424 Trichuris muris From_analysis: WormBase-Compara
      FB:FBgn0033069 Drosophila melanogaster From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0037270 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-100215-2 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      HGNC:3275 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1913335 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      RGD:1306112 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
    Paralog: WBGene00000818 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00004464 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable translation initiation factor binding activity. Predicted to contribute to translation initiation factor activity. Involved in translation. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 3 complex, eIF3m. Human ortholog(s) of this gene implicated in autosomal recessive intellectual developmental disorder 67. Is an ortholog of human EIF3F (eukaryotic translation initiation factor 3 subunit F). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0081228 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:3275)
  Molecular_info: Corresponding_CDS: D2013.7
    Corresponding_transcript: D2013.7.1
    Other_sequence (35)
    Associated_feature: WBsf644565
      WBsf658095
      WBsf658096
      WBsf221874
      WBsf221875
      WBsf221876
  Experimental_info: RNAi_result (18)
    Expr_pattern: Expr1028130
      Expr1030777
      Expr1147439
      Expr2011256
      Expr2029492
    Microarray_results (21)
    Expression_cluster (116)
    Interaction (134)
  Map_info: Map: II Position: 1.27302 Error: 0.002801
    Positive: Positive_clone: D2013 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00027281
    WBPaper00029237
    WBPaper00029254
    WBPaper00029435
    WBPaper00035228
    WBPaper00038491
    WBPaper00049828
    WBPaper00055090
    WBPaper00061750
  Remark: The capital letters are used here to distinguish the different eIF3 subunit genes. This roughly agrees with worm gene nomenclature and it makes clear the orthologies for these universal factors (eif-3B corresponding to eIF3b, and so on), in the unified eIF3 nomenclature proposed by Browning KS et al (2001)[JAH][030106 ck1]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene