WormBase Tree Display for Gene: WBGene00004464
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| WBGene00004464 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | R12E2 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | rpn-8 | Person_evidence | WBPerson1551 | |||||
| Sequence_name | R12E2.3 | ||||||||
| Molecular_name | R12E2.3 | ||||||||
| R12E2.3.1 | |||||||||
| CE18135 | |||||||||
| Other_name | CELE_R12E2.3 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | rpn-8 | ||||||||
| DB_info | Database | AceView | gene | 1E745 | |||||
| WormQTL | gene | WBGene00004464 | |||||||
| WormFlux | gene | WBGene00004464 | |||||||
| NDB | locus_tag | CELE_R12E2.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004464|UniProtKB=O61792 | |||||||
| family | PTHR10540 | ||||||||
| NCBI | gene | 172009 | |||||||
| RefSeq | protein | NM_058918.8 | |||||||
| TrEMBL | UniProtAcc | O61792 | |||||||
| UniProt_GCRP | UniProtAcc | O61792 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rpn | ||||||||
| Allele (39) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00036358 | ||||||||
| 00036359 | |||||||||
| 00036360 | |||||||||
| 00036361 | |||||||||
| 00036362 | |||||||||
| 00036363 | |||||||||
| 00036364 | |||||||||
| 00036365 | |||||||||
| 00112938 | |||||||||
| 00112939 | |||||||||
| Ortholog (36) | |||||||||
| Paralog | WBGene00000818 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00001229 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable metallopeptidase activity. Involved in programmed cell death involved in cell development. Predicted to be part of proteasome complex. Is an ortholog of human PSMD7 (proteasome 26S subunit, non-ATPase 7). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R12E2.3 | |||||||
| Corresponding_transcript | R12E2.3.1 | ||||||||
| Other_sequence (111) | |||||||||
| Associated_feature | WBsf643188 | ||||||||
| WBsf983348 | |||||||||
| WBsf983349 | |||||||||
| WBsf217488 | |||||||||
| WBsf217489 | |||||||||
| Experimental_info | RNAi_result (28) | ||||||||
| Expr_pattern | Chronogram866 | ||||||||
| Expr6517 | |||||||||
| Expr1022446 | |||||||||
| Expr1032267 | |||||||||
| Expr1155513 | |||||||||
| Expr2015496 | |||||||||
| Expr2033731 | |||||||||
| Drives_construct | WBCnstr00003661 | ||||||||
| WBCnstr00035465 | |||||||||
| Construct_product | WBCnstr00035465 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (146) | |||||||||
| Interaction (198) | |||||||||
| Map_info | Map | I | Position | -1.63314 | Error | 0.002222 | |||
| Positive | Positive_clone | R12E2 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (16) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
