WormBase Tree Display for Gene: WBGene00000818
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| WBGene00000818 | SMap | S_parent | Sequence | Y67H2A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | csn-6 | Person_evidence | WBPerson57 | |||||
| Sequence_name | Y67H2A.6 | ||||||||
| Molecular_name | Y67H2A.6a | ||||||||
| Y67H2A.6a.1 | |||||||||
| CE28377 | |||||||||
| Y67H2A.6b | |||||||||
| CE43901 | |||||||||
| Y67H2A.6b.1 | |||||||||
| Other_name | CELE_Y67H2A.6 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | csn-6 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | csn | ||||||||
| Allele (52) | |||||||||
| Strain | WBStrain00036363 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00088001 | ||||||||
| 00088002 | |||||||||
| 00088003 | |||||||||
| 00088004 | |||||||||
| 00088005 | |||||||||
| 00088006 | |||||||||
| 00088007 | |||||||||
| 00088008 | |||||||||
| 00107839 | |||||||||
| 00107840 | |||||||||
| Contained_in_operon | CEOP4538 | ||||||||
| Ortholog (30) | |||||||||
| Paralog | WBGene00001229 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00004464 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | csn-6 encodes a homolog of COP9 signalosome complex subunit 2 that affects embryonic viability and fertility. | Paper_evidence | WBPaper00004651 | |||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable metallopeptidase activity. Predicted to be involved in oogenesis. Predicted to be located in cytoplasm and nucleus. Predicted to be part of COP9 signalosome. Is an ortholog of human COPS6 (COP9 signalosome subunit 6). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y67H2A.6a | |||||||
| Y67H2A.6b | |||||||||
| Corresponding_transcript | Y67H2A.6a.1 | ||||||||
| Y67H2A.6b.1 | |||||||||
| Other_sequence | CBC15800_1 | ||||||||
| CJC14366_1 | |||||||||
| CR01778 | |||||||||
| CBC03745_1 | |||||||||
| CR09077 | |||||||||
| CJC14725_1 | |||||||||
| CRC00426_1 | |||||||||
| Associated_feature | WBsf229411 | ||||||||
| WBsf229412 | |||||||||
| WBsf229413 | |||||||||
| Experimental_info | RNAi_result (17) | ||||||||
| Expr_pattern | Expr1025433 | ||||||||
| Expr1030509 | |||||||||
| Expr1161433 | |||||||||
| Expr2010555 | |||||||||
| Expr2028795 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (87) | |||||||||
| Interaction (36) | |||||||||
| Map_info | Map | IV | Position | 8.5177 | Error | 0.00116 | |||
| Positive | Positive_clone | Y67H2A | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 5570 | |||||||
| 4297 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005914 | ||||||||
| WBPaper00029237 | |||||||||
| WBPaper00033494 | |||||||||
| WBPaper00034645 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061750 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
