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WormBase Tree Display for Gene: WBGene00000992

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Name Class

WBGene00000992SMapS_parentSequenceF27D9
IdentityVersion1
NameCGC_namedhs-29Person_evidenceWBPerson651
Sequence_nameF27D9.6
Molecular_nameF27D9.6
F27D9.6.1
CE28011
Other_nameCELE_F27D9.6Accession_evidenceNDBBX284606
Public_namedhs-29
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:22WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classdhs
Allele (47)
StrainWBStrain00004726
WBStrain00004735
WBStrain00004743
WBStrain00037922
RNASeq_FPKM (74)
GO_annotation00066044
00066045
00066046
Ortholog (31)
Paralog (38)
Structured_descriptionAutomated_descriptionPredicted to enable oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor. Predicted to be located in lipid droplet.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF27D9.6
Corresponding_transcriptF27D9.6.1
Other_sequence (15)
Associated_featureWBsf670021
WBsf670758
WBsf670759
WBsf670760
WBsf670761
WBsf1005918
WBsf1023292
WBsf237602
WBsf237603
Experimental_infoRNAi_resultWBRNAi00045748Inferred_automaticallyRNAi_primary
WBRNAi00031500Inferred_automaticallyRNAi_primary
Expr_patternExpr1022252
Expr1030617
Expr1149658
Expr2010913
Expr2029152
Drives_constructWBCnstr00037153
Construct_productWBCnstr00037153
Microarray_results (21)
Expression_clusterWBPaper00031040:Cluster_6
WBPaper00031040:TGF-beta_adult_upregulated
WBPaper00033065:clk-1(qm30)_upregulated
WBPaper00037682:sma-2_sma-4_upregulated
WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
WBPaper00040221:DAF-12_target_ALF4
WBPaper00040560:hpl-2_L3_upregulated
WBPaper00044578:reduced-humidity_downregulated_microarray
WBPaper00044638:daf-2(e1370)rsks-1(ok1255)_regulated
WBPaper00044736:oscillating_dev_expression
WBPaper00045521:Gender_Neutral
WBPaper00046012:tdp-1(ok803)_upregulated
WBPaper00046337:polysomal_daf-2_vs_daf-2;daf-16_downregulated
WBPaper00046337:polysomal_N2_vs_daf-2_downregulated
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00048923:Aging_regulated
WBPaper00048926:miaserin_upregulated_adult-day5
WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031)
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00051245:epidermis_nucleus_expressed
WBPaper00051404:alg-1(gk214)_downregulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053321:PGCs_depleted_NuGen
WBPaper00053388:dauer_regulated_Cluster5
WBPaper00053664:ins-11(tm1053)_upregulated
WBPaper00054758:alg-1(gk204)_upregulated
WBPaper00055354:Rapamycin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Psora_downregulated
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056139:soil-microbiota_upregulated
WBPaper00056169:rrf-3(pk1426)_downregulated_L4
WBPaper00056290:hsp-6(mg585)_upregulated
WBPaper00056330:glycine_downregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056826:hmc_biased
WBPaper00056868:P.aeruginosa_upregulated_smallRNA
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00057041:unc-70(cas983)_upregulated
WBPaper00057068:numr-1(RNAi)_downregulated
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058691:set-2(bn129)_upregulated
WBPaper00059471:EGL-43_interacting
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
WBPaper00060014:set-2(tm1630)_downregulated
WBPaper00060445:ikb-1(nr2027)_downregulated_L4
WBPaper00060661:sensory-neuron_enriched
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00060921:tdc-1(n3419)_downregulated
WBPaper00061203:let-418(n3536)_upregulated
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061340:BWM_anterior
WBPaper00061439:unc-30(ok613)_upregulated
WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
WBPaper00061527:mlt-9_22518-F33D4.6_14044
WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062184:PA14_downregulated
WBPaper00062293:clk-1(qm30)_downregulated
WBPaper00062293:isp-1(qm150)_downregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062446:nhr-8(hd117)_upregulated
WBPaper00062456:doxycycline_upregulated_CB4856_protein
WBPaper00062456:doxycycline_upregulated_N2_protein
WBPaper00062590:Aging_downregulated_hypodermis
WBPaper00064005:starvation_downregulated_N2_mRNA
WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064306:Agaro-oligosaccharides_upregulated
WBPaper00064315:mes-4(bn73)_upregulated_EGCs
WBPaper00064532:pals-25(icb98)_downregulated
WBPaper00064716:paraquat_downregulated
WBPaper00064871:hypoxia_downregulated_F2
WBPaper00064933:bcf-1(ylf1)_upregulated_transcript
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065835:Day5_vs_Day1_downregulated
WBPaper00065841:40_0
WBPaper00065945:epidermis-rpoa-2(-)_downregulated_transcript
WBPaper00065945:global-rpoa-2(-)_downregulated_transcript
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066110:tetraploid_vs_diploid_upregulated
cgc4386_cluster_4_6
cgc4489_group_8
WBPaper00005124:cholesterol_10-9M_regulated
WBPaper00025032:cluster_2
WBPaper00025141:N2_Expressed_Genes
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00032062:age_regulated_genes
WBPaper00034739:N2lessDR1350
WBPaper00036130:mir-243_up_regulated
WBPaper00036286:Pattern_C
WBPaper00037695:WC_5-day
WBPaper00040185:nhr-23(RNAi)_downregulated
WBPaper00040210:Diazinon_24C_regulated
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00040963:Q100_down
WBPaper00040963:Q200_down
WBPaper00041002:HF_11d_0.2mM_Up
WBPaper00041207:CE_dauer_down
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-exposed_51h
WBPaper00041960:N2_fasting_upregulated_anytime
WBPaper00044091:Bpseudomallei_repressed_12h
WBPaper00045263:0.1mM-paraquat_upregulated
WBPaper00045960:L4-lethargus_downregulated
WBPaper00046548:dafachronic-acid_upregulated
WBPaper00047070:N2_starvation_downregulated
WBPaper00047070:xpa-1_UV_upregulated
WBPaper00048989:N2_rapamycin_upregulated
[cgc5767]:cluster_2
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(53_min)
[cgc5767]:expression_class_SE
[cgc5767]:expression_class_SE_pi(53_min)
[cgc6390]:Cluster_B
Interaction (41)
Map_infoMapXPosition-1.41664
PositivePositive_cloneF27D9Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038491
WBPaper00042257
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
[200811 gw3] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (-1.43987)
MethodGene