WormBase Tree Display for Gene: WBGene00000960
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| WBGene00000960 | SMap | S_parent | Sequence | F54G8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | dgk-3 | Person_evidence | WBPerson453 | |||||
| Sequence_name | F54G8.2 | ||||||||
| Molecular_name | F54G8.2 | ||||||||
| F54G8.2.1 | |||||||||
| CE46230 | |||||||||
| Other_name | CELE_F54G8.2 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | dgk-3 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:22 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | dgk | ||||||||
| Allele (60) | |||||||||
| Strain | WBStrain00035591 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (21) | |||||||||
| Ortholog (43) | |||||||||
| Paralog | WBGene00000958 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00000959 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00006483 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00019428 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | dgk-3 encodes a diacylglycerol kinase that is the C. elegans ortholog of mammalian DGK-beta; dgk-3 activity is required for regulation of long-term thermotactic behavioral plasticity and for regulation of olfactory adaptation; large-scale expression studies have reported dgk-3 expression in head neurons, the intestine, and the pharyngeal lumen, while expression profiling indicates that dgk-3 is expressed in the AFD thermosensory neurons as well as a small number of additional sensory neurons. | Paper_evidence | WBPaper00002318 | |||||
| WBPaper00006525 | |||||||||
| WBPaper00024671 | |||||||||
| WBPaper00027044 | |||||||||
| WBPaper00028767 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 12 Feb 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable ATP-dependent diacylglycerol kinase activity. Involved in olfactory behavior; regulation of long-term neuronal synaptic plasticity; and thermotaxis. Predicted to be located in plasma membrane. Expressed in amphid neurons; head; and pharyngeal lumen. Is an ortholog of human DGKA (diacylglycerol kinase alpha); DGKB (diacylglycerol kinase beta); and DGKG (diacylglycerol kinase gamma). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F54G8.2 | |||||||
| Corresponding_CDS_history | F54G8.2:wp98 | ||||||||
| F54G8.2:wp227 | |||||||||
| Corresponding_transcript | F54G8.2.1 | ||||||||
| Other_sequence (14) | |||||||||
| Associated_feature | WBsf645468 | ||||||||
| WBsf993593 | |||||||||
| WBsf993594 | |||||||||
| WBsf993595 | |||||||||
| WBsf1015556 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00048388 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00006163 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015668 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032822 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram293 | ||||||||
| Expr23 | |||||||||
| Expr6186 | |||||||||
| Expr11097 | |||||||||
| Expr1022527 | |||||||||
| Expr1152180 | |||||||||
| Expr2010865 | |||||||||
| Expr2029103 | |||||||||
| Drives_construct | WBCnstr00002601 | ||||||||
| WBCnstr00018166 | |||||||||
| WBCnstr00037178 | |||||||||
| Construct_product | WBCnstr00018166 | ||||||||
| WBCnstr00037178 | |||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (91) | |||||||||
| Interaction | WBInteraction000009141 | ||||||||
| WBInteraction000049966 | |||||||||
| WBInteraction000122632 | |||||||||
| WBInteraction000173106 | |||||||||
| WBInteraction000382709 | |||||||||
| WBInteraction000411402 | |||||||||
| WBInteraction000419419 | |||||||||
| WBInteraction000439799 | |||||||||
| WBInteraction000456311 | |||||||||
| Map_info | Map | III | Position | 0.250771 | Error | 0.010231 | |||
| Positive | Positive_clone | F54G8 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4257 | |||||||
| 4516 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (16) | |||||||||
| Remark | Sequence connection from [Nurrish SJ], [krb 020711] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
