WormBase Tree Display for Gene: WBGene00000931
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| WBGene00000931 | SMap | S_parent | Sequence | C25A1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | dao-5 | Person_evidence | WBPerson359 | |||||
| Sequence_name | C25A1.10 | ||||||||
| Molecular_name | C25A1.10a | ||||||||
| C25A1.10a.1 | |||||||||
| CE08376 | |||||||||
| C25A1.10b | |||||||||
| CE38279 | |||||||||
| C25A1.10b.1 | |||||||||
| Other_name | CELE_C25A1.10 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | dao-5 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00000931 | |||||
| WormFlux | gene | WBGene00000931 | |||||||
| NDB | locus_tag | CELE_C25A1.10 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000931|UniProtKB=Q9XVS4 | |||||||
| family | PTHR23216 | ||||||||
| NCBI | gene | 266845 | |||||||
| RefSeq | protein | NM_001025834.6 | |||||||
| NM_001025833.10 | |||||||||
| SwissProt | UniProtAcc | Q9XVS4 | |||||||
| TREEFAM | TREEFAM_ID | TF341730 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XVS4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:22 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | dao | ||||||||
| Allele (34) | |||||||||
| Strain | WBStrain00035691 | ||||||||
| WBStrain00030111 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (20) | |||||||||
| Ortholog (17) | |||||||||
| Structured_description | Concise_description | dao-5 encodes a predicted nucleolar phosphoprotein related to Saccharomyces cerevisiae SRP40 and the vertebrate Nopp140 proteins that may play a role in rRNA gene transcription and nucleolar structural organization; dao-5 expression is negatively regulated by the DAF-2/insulin-like receptor and positively regulated by the DAF-16/fork-head transcription factor, suggesting that dao-5 may be involved in life-span determination; dao-5 is strongly expressed in dauer larvae; DAO-5 localizes to nucleoli. | Paper_evidence | WBPaper00005073 | |||||
| WBPaper00013265 | |||||||||
| WBPaper00041268 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 16 Nov 2012 00:00:00 | ||||||||
| Automated_description | Enables RNA polymerase I core binding activity and rDNA binding activity. Involved in several processes, including determination of adult lifespan; insulin receptor signaling pathway; and nucleolar large rRNA transcription by RNA polymerase I. Located in nucleolus and nucleoplasm. Expressed in germline precursor cell; gonadal sheath cell; hypodermis; and somatic cell. Is an ortholog of human NOLC1 (nucleolar and coiled-body phosphoprotein 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C25A1.10a | |||||||
| C25A1.10b | |||||||||
| Corresponding_transcript | C25A1.10a.1 | ||||||||
| C25A1.10b.1 | |||||||||
| Other_sequence (52) | |||||||||
| Associated_feature | WBsf649557 | ||||||||
| WBsf664843 | |||||||||
| WBsf664844 | |||||||||
| WBsf220205 | |||||||||
| WBsf220206 | |||||||||
| WBsf220207 | |||||||||
| Transcription_factor | WBTranscriptionFactor000159 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00003005 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00075870 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041137 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr5332 | ||||||||
| Expr10101 | |||||||||
| Expr11751 | |||||||||
| Expr1017844 | |||||||||
| Expr1030580 | |||||||||
| Expr1145169 | |||||||||
| Expr1200377 | |||||||||
| Expr2010789 | |||||||||
| Expr2029026 | |||||||||
| Drives_construct | WBCnstr00003692 | ||||||||
| WBCnstr00019427 | |||||||||
| WBCnstr00037193 | |||||||||
| Construct_product | WBCnstr00019250 | ||||||||
| WBCnstr00019427 | |||||||||
| WBCnstr00020269 | |||||||||
| WBCnstr00037193 | |||||||||
| Antibody | WBAntibody00002179 | ||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (149) | |||||||||
| Interaction (292) | |||||||||
| Map_info | Map | I | Position | 4.73079 | Error | 0.002326 | |||
| Positive | Positive_clone | C25A1 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4147 | |||||||
| 4252 | |||||||||
| 4312 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (14) | |||||||||
| Remark | Sequence connection from [Yu H, Larsen PL], [krb 020711] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
