WormBase Tree Display for Gene: WBGene00000888
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| WBGene00000888 | SMap | S_parent | Sequence | C34D4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cyn-12 | Person_evidence | WBPerson466 | |||||
| Sequence_name | C34D4.12 | ||||||||
| Molecular_name | C34D4.12a | ||||||||
| C34D4.12a.1 | |||||||||
| CE17506 | |||||||||
| C34D4.12b | |||||||||
| CE49222 | |||||||||
| C34D4.12b.1 | |||||||||
| Other_name | cyp-12 | Person_evidence | WBPerson466 | ||||||
| CELE_C34D4.12 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | cyn-12 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 20 Sep 2004 16:20:03 | WBPerson1971 | Name_change | CGC_name | cyp-12 -> cyn-12 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cyn | ||||||||
| Allele (15) | |||||||||
| Legacy_information | [Page AP] C34D4.12. No mutants known. Transpliced to SL1 and SL2 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00061263 | ||||||||
| 00061264 | |||||||||
| 00061265 | |||||||||
| 00061266 | |||||||||
| 00061267 | |||||||||
| 00061268 | |||||||||
| 00061269 | |||||||||
| 00061270 | |||||||||
| 00107948 | |||||||||
| 00107949 | |||||||||
| Ortholog (37) | |||||||||
| Paralog (18) | |||||||||
| Structured_description | Concise_description | cyn-12 encodes a member of the cyclophilin family that is related to human PPIL1 (CGI-124); based upon its sequence similarity, CYN-12 is predicted to be a cytoplasmic protein potentially involved in a wide range of signal transduction pathways. | Paper_evidence | WBPaper00026884 | |||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson1843 | |||||||||
| Date_last_updated | 20 Mar 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to be part of catalytic step 2 spliceosome. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 14. Is an ortholog of human PPIL1 (peptidylprolyl isomerase like 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0112325 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9260) | ||||
| Molecular_info | Corresponding_CDS | C34D4.12a | |||||||
| C34D4.12b | |||||||||
| Corresponding_transcript | C34D4.12a.1 | ||||||||
| C34D4.12b.1 | |||||||||
| Other_sequence (54) | |||||||||
| Associated_feature | WBsf651890 | ||||||||
| WBsf230223 | |||||||||
| Experimental_info | RNAi_result (12) | ||||||||
| Expr_pattern | Expr1011395 | ||||||||
| Expr1030553 | |||||||||
| Expr1145887 | |||||||||
| Expr2010664 | |||||||||
| Expr2028904 | |||||||||
| Drives_construct | WBCnstr00037218 | ||||||||
| Construct_product | WBCnstr00037218 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (110) | |||||||||
| Interaction (56) | |||||||||
| Map_info | Map | IV | Position | 3.29058 | Error | 8.3e-05 | |||
| Positive | Positive_clone | C34D4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00026884 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | This gene has been renamed with approval of the CGC (cyp-12->cyn-12) | Person_evidence | WBPerson466 | ||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
