WormBase Tree Display for Gene: WBGene00000886
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| WBGene00000886 | SMap | S_parent | Sequence | B0252 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cyn-10 | Person_evidence | WBPerson466 | |||||
| Sequence_name | B0252.4 | ||||||||
| Molecular_name | B0252.4a | ||||||||
| B0252.4a.1 | |||||||||
| CE02420 | |||||||||
| B0252.4b | |||||||||
| CE27567 | |||||||||
| B0252.4b.1 | |||||||||
| Other_name | cyp-10 | Person_evidence | WBPerson466 | ||||||
| CELE_B0252.4 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | cyn-10 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 20 Sep 2004 16:20:03 | WBPerson1971 | Name_change | CGC_name | cyp-10 -> cyn-10 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cyn | ||||||||
| Allele (19) | |||||||||
| Legacy_information | [C.elegansII] NMK. Cyclophilin family (diverged CsA-binding domain). Cosmid B0252. [TP] | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00047662 | ||||||||
| 00047663 | |||||||||
| 00047664 | |||||||||
| 00047665 | |||||||||
| 00047666 | |||||||||
| 00047667 | |||||||||
| 00107944 | |||||||||
| 00107945 | |||||||||
| Ortholog (31) | |||||||||
| Paralog (18) | |||||||||
| Structured_description | Concise_description | cyn-10 encodes a divergent cyclophilin isoform that is functional when expressed in E. coli. | Paper_evidence | WBPaper00002472 | |||||
| WBPaper00026884 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson1843 | |||||||||
| Date_last_updated | 20 Mar 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to be part of catalytic step 2 spliceosome. Is an ortholog of human PPIL3 (peptidylprolyl isomerase like 3). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | B0252.4a | |||||||
| B0252.4b | |||||||||
| Corresponding_transcript | B0252.4a.1 | ||||||||
| B0252.4b.1 | |||||||||
| Other_sequence (37) | |||||||||
| Associated_feature | WBsf650195 | ||||||||
| WBsf223257 | |||||||||
| WBsf223258 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00001715 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00027811 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00038813 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1011585 | ||||||||
| Expr1030551 | |||||||||
| Expr1143016 | |||||||||
| Expr2010662 | |||||||||
| Expr2028902 | |||||||||
| Drives_construct | WBCnstr00037220 | ||||||||
| Construct_product | WBCnstr00037220 | ||||||||
| Microarray_results (28) | |||||||||
| Expression_cluster (144) | |||||||||
| Interaction (18) | |||||||||
| Map_info | Map | II | Position | 0.143315 | Error | 0.00176 | |||
| Positive | Positive_clone | B0252 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00002472 | ||||||||
| WBPaper00015503 | |||||||||
| WBPaper00026884 | |||||||||
| WBPaper00032502 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065026 | |||||||||
| Remark | Cyclophilin family (diverged CsA-binding domain). | ||||||||
| [Page AM] Identified by the sequencing project. cyclophilin homology by Blast analysis. cDNA clone isolated. | |||||||||
| PPIase or cyclophilin, EC 5.2.1.8 | |||||||||
| This gene has been renamed with approval of the CGC (cyp-10->cyn-10) | Person_evidence | WBPerson466 | |||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
