WormBase Tree Display for Gene: WBGene00000870
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WBGene00000870 | SMap | S_parent | Sequence | Y38F1A | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | cyd-1 | Person_evidence | WBPerson346 | |||||
Sequence_name | Y38F1A.5 | ||||||||
Molecular_name | Y38F1A.5 | ||||||||
Y38F1A.5.1 | |||||||||
CE21610 | |||||||||
Y38F1A.5.2 | |||||||||
Other_name | CELE_Y38F1A.5 | Accession_evidence | NDB | BX284602 | |||||
Public_name | cyd-1 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | cyd | ||||||||
Allele (333) | |||||||||
Legacy_information | [Krause MW] cyd-1 is related to the G1 cyclin, Cyclin D. | ||||||||
Strain | WBStrain00030564 | ||||||||
WBStrain00034602 | |||||||||
WBStrain00034604 | |||||||||
WBStrain00035845 | |||||||||
WBStrain00047322 | |||||||||
WBStrain00054804 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (31) | |||||||||
Ortholog (47) | |||||||||
Paralog (13) | |||||||||
Structured_description | Concise_description | cyd-1 encodes a cyclin D homolog that is required for escape from G1 cycle arrest in postembryonic blast cells, affects movement and larval viability, and may physically interact with CDK-46 and CKI-1; expressed embryonically primarily in the head, ventral cord, tail, and is later expressed primarily in the seam cells and in the somatic gonad. | Paper_evidence | WBPaper00003752 | |||||
WBPaper00004996 | |||||||||
Curator_confirmed | WBPerson48 | ||||||||
Date_last_updated | 09 Aug 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Involved in several processes, including regulation of cell cycle process; regulation of cell division; and reproductive process. Acts upstream of or within nematode male tail tip morphogenesis. Predicted to be located in cytoplasm and nucleus. Predicted to be part of cyclin-dependent protein kinase holoenzyme complex. Expressed in gonad; hypodermis; intestine; neurons; and vulva. Human ortholog(s) of this gene implicated in several diseases, including breast carcinoma (multiple); carcinoma (multiple); and hematologic cancer (multiple). Is an ortholog of human CCND3 (cyclin D3). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model (49) | ||||||||
Molecular_info | Corresponding_CDS | Y38F1A.5 | |||||||
Corresponding_transcript | Y38F1A.5.1 | ||||||||
Y38F1A.5.2 | |||||||||
Other_sequence | Oden_isotig22946 | ||||||||
Dviv_isotig27397 | |||||||||
CJC13402_1 | |||||||||
CRC09536_1 | |||||||||
JI482584.1 | |||||||||
CR07700 | |||||||||
FD516691.1 | |||||||||
CSC00981_1 | |||||||||
Associated_feature (29) | |||||||||
Experimental_info | RNAi_result (23) | ||||||||
Expr_pattern | Expr1155 | ||||||||
Expr12577 | |||||||||
Expr1022984 | |||||||||
Expr1030537 | |||||||||
Expr1159559 | |||||||||
Expr2010653 | |||||||||
Expr2028893 | |||||||||
Drives_construct | WBCnstr00010111 | ||||||||
WBCnstr00021179 | |||||||||
WBCnstr00037234 | |||||||||
Construct_product | WBCnstr00010111 | ||||||||
WBCnstr00037234 | |||||||||
Regulate_expr_cluster | WBPaper00040426:CYD-1_CDK-4_downregulated | ||||||||
WBPaper00040426:CYD-1_CDK-4_upregulated | |||||||||
Microarray_results (26) | |||||||||
Expression_cluster (186) | |||||||||
Interaction (100) | |||||||||
Anatomy_function | WBbtf0481 | ||||||||
Map_info | Map | II | Position | 13.2907 | Error | 0.135916 | |||
Positive | Positive_clone | Y38F1A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 4247 | |||||||
4770 | |||||||||
Pseudo_map_position | |||||||||
Reference (38) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |