WormBase Tree Display for Gene: WBGene00000870
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| WBGene00000870 | SMap | S_parent | Sequence | Y38F1A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | cyd-1 | Person_evidence | WBPerson346 | |||||
| Sequence_name | Y38F1A.5 | ||||||||
| Molecular_name | Y38F1A.5 | ||||||||
| Y38F1A.5.1 | |||||||||
| CE21610 | |||||||||
| Y38F1A.5.2 | |||||||||
| Other_name | CELE_Y38F1A.5 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | cyd-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cyd | ||||||||
| Allele (333) | |||||||||
| Legacy_information | [Krause MW] cyd-1 is related to the G1 cyclin, Cyclin D. | ||||||||
| Strain | WBStrain00030564 | ||||||||
| WBStrain00034602 | |||||||||
| WBStrain00034604 | |||||||||
| WBStrain00035845 | |||||||||
| WBStrain00047322 | |||||||||
| WBStrain00054804 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (31) | |||||||||
| Ortholog (47) | |||||||||
| Paralog (13) | |||||||||
| Structured_description | Concise_description | cyd-1 encodes a cyclin D homolog that is required for escape from G1 cycle arrest in postembryonic blast cells, affects movement and larval viability, and may physically interact with CDK-46 and CKI-1; expressed embryonically primarily in the head, ventral cord, tail, and is later expressed primarily in the seam cells and in the somatic gonad. | Paper_evidence | WBPaper00003752 | |||||
| WBPaper00004996 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 09 Aug 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Involved in several processes, including regulation of cell cycle process; regulation of cell division; and reproductive process. Acts upstream of or within nematode male tail tip morphogenesis. Predicted to be located in cytoplasm and nucleus. Predicted to be part of cyclin-dependent protein kinase holoenzyme complex. Expressed in gonad; hypodermis; intestine; neurons; and vulva. Human ortholog(s) of this gene implicated in several diseases, including breast carcinoma (multiple); carcinoma (multiple); and hematologic cancer (multiple). Is an ortholog of human CCND3 (cyclin D3). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model (49) | ||||||||
| Molecular_info | Corresponding_CDS | Y38F1A.5 | |||||||
| Corresponding_transcript | Y38F1A.5.1 | ||||||||
| Y38F1A.5.2 | |||||||||
| Other_sequence | Oden_isotig22946 | ||||||||
| Dviv_isotig27397 | |||||||||
| CJC13402_1 | |||||||||
| CRC09536_1 | |||||||||
| JI482584.1 | |||||||||
| CR07700 | |||||||||
| FD516691.1 | |||||||||
| CSC00981_1 | |||||||||
| Associated_feature (29) | |||||||||
| Experimental_info | RNAi_result (23) | ||||||||
| Expr_pattern | Expr1155 | ||||||||
| Expr12577 | |||||||||
| Expr1022984 | |||||||||
| Expr1030537 | |||||||||
| Expr1159559 | |||||||||
| Expr2010653 | |||||||||
| Expr2028893 | |||||||||
| Drives_construct | WBCnstr00010111 | ||||||||
| WBCnstr00021179 | |||||||||
| WBCnstr00037234 | |||||||||
| Construct_product | WBCnstr00010111 | ||||||||
| WBCnstr00037234 | |||||||||
| Regulate_expr_cluster | WBPaper00040426:CYD-1_CDK-4_downregulated | ||||||||
| WBPaper00040426:CYD-1_CDK-4_upregulated | |||||||||
| Microarray_results (26) | |||||||||
| Expression_cluster (186) | |||||||||
| Interaction (100) | |||||||||
| Anatomy_function | WBbtf0481 | ||||||||
| Map_info | Map | II | Position | 13.2907 | Error | 0.135916 | |||
| Positive | Positive_clone | Y38F1A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4247 | |||||||
| 4770 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003752 | ||||||||
| WBPaper00004996 | |||||||||
| WBPaper00005046 | |||||||||
| WBPaper00005165 | |||||||||
| WBPaper00005260 | |||||||||
| WBPaper00005298 | |||||||||
| WBPaper00010569 | |||||||||
| WBPaper00010688 | |||||||||
| WBPaper00011108 | |||||||||
| WBPaper00017802 | |||||||||
| WBPaper00019698 | |||||||||
| WBPaper00019745 | |||||||||
| WBPaper00023428 | |||||||||
| WBPaper00023601 | |||||||||
| WBPaper00024958 | |||||||||
| WBPaper00025706 | |||||||||
| WBPaper00026839 | |||||||||
| WBPaper00026891 | |||||||||
| WBPaper00027234 | |||||||||
| WBPaper00028406 | |||||||||
| WBPaper00029328 | |||||||||
| WBPaper00034924 | |||||||||
| WBPaper00038411 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00040884 | |||||||||
| WBPaper00041651 | |||||||||
| WBPaper00041771 | |||||||||
| WBPaper00042805 | |||||||||
| WBPaper00042822 | |||||||||
| WBPaper00046296 | |||||||||
| WBPaper00048690 | |||||||||
| WBPaper00050501 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056826 | |||||||||
| WBPaper00060275 | |||||||||
| WBPaper00063060 | |||||||||
| WBPaper00064336 | |||||||||
| WBPaper00064680 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
