WormBase Tree Display for Gene: WBGene00000840
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WBGene00000840 | SMap | S_parent | Sequence | ZK856 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | cul-5 | Person_evidence | WBPerson1052 | |||||
Sequence_name | ZK856.1 | ||||||||
Molecular_name (3) | |||||||||
Other_name | CELE_ZK856.1 | Accession_evidence | NDB | BX284605 | |||||
Public_name | cul-5 | ||||||||
DB_info | Database | AceView | gene | 5K663 | |||||
WormQTL | gene | WBGene00000840 | |||||||
WormFlux | gene | WBGene00000840 | |||||||
NDB | locus_tag | CELE_ZK856.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00000840|UniProtKB=Q23639 | |||||||
family | PTHR11932 | ||||||||
NCBI | gene | 179413 | |||||||
RefSeq | protein | NM_073215.8 | |||||||
SwissProt | UniProtAcc | Q23639 | |||||||
TREEFAM | TREEFAM_ID | TF105874 | |||||||
UniProt_GCRP | UniProtAcc | Q23639 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | cul | ||||||||
Allele (48) | |||||||||
Strain | WBStrain00001851 | ||||||||
WBStrain00032168 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00079158 | ||||||||
00079159 | |||||||||
00079160 | |||||||||
00079161 | |||||||||
00079162 | |||||||||
00079163 | |||||||||
00079164 | |||||||||
00107887 | |||||||||
00107888 | |||||||||
Contained_in_operon | CEOP5246 | ||||||||
Ortholog (39) | |||||||||
Paralog | WBGene00000836 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00000837 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00000838 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00000839 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00000841 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00000143 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | cul-5 encodes a cullin, orthologous to vasopressin-activated calcium-mobilizing receptor-1 in mammals, that is thought to regulate the cell cycle by virtue of its paralogy to cul-1 and cul-2; however, CUL-5 is dispensable for viability and gross morphology in mass RNAi screens, and does not appear to interact with any of 17 Skp1-related proteins (SKR-1 through SKR-21). | Paper_evidence | WBPaper00002473 | |||||
WBPaper00005128 | |||||||||
WBPaper00005654 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable protein-macromolecule adaptor activity and ubiquitin protein ligase binding activity. Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process and protein ubiquitination. Predicted to be part of Cul5-RING ubiquitin ligase complex and SCF ubiquitin ligase complex. Expressed in several structures, including head; intestine; nervous system; tail; and vulval muscle. Is an ortholog of human CUL5 (cullin 5). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | ZK856.1 | |||||||
Corresponding_CDS_history | ZK856.1:wp175 | ||||||||
Corresponding_transcript | ZK856.1.1 | ||||||||
Other_sequence (34) | |||||||||
Associated_feature | WBsf647140 | ||||||||
WBsf661616 | |||||||||
WBsf1001071 | |||||||||
Experimental_info | RNAi_result (20) | ||||||||
Expr_pattern | Chronogram1562 | ||||||||
Expr7264 | |||||||||
Expr8294 | |||||||||
Expr1024104 | |||||||||
Expr1030522 | |||||||||
Expr1163196 | |||||||||
Expr2010590 | |||||||||
Expr2028830 | |||||||||
Drives_construct | WBCnstr00002643 | ||||||||
WBCnstr00037253 | |||||||||
Construct_product | WBCnstr00037253 | ||||||||
Microarray_results (18) | |||||||||
Expression_cluster (112) | |||||||||
Interaction (34) | |||||||||
Map_info | Map | V | Position | 2.30976 | Error | 0.009953 | |||
Positive | Positive_clone | ZK856 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 5581 | |||||||
Pseudo_map_position | |||||||||
Reference (13) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |