WormBase Tree Display for Gene: WBGene00000840
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WBGene00000840 | SMap | S_parent | Sequence | ZK856 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | cul | ||||||
Allele (48) | |||||||
Strain | WBStrain00001851 | ||||||
WBStrain00032168 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00079158 | ||||||
00079159 | |||||||
00079160 | |||||||
00079161 | |||||||
00079162 | |||||||
00079163 | |||||||
00079164 | |||||||
00107887 | |||||||
00107888 | |||||||
Contained_in_operon | CEOP5246 | ||||||
Ortholog (39) | |||||||
Paralog | WBGene00000836 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | |||||||
WBGene00000837 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00000838 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00000839 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00000841 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00000143 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Concise_description | cul-5 encodes a cullin, orthologous to vasopressin-activated calcium-mobilizing receptor-1 in mammals, that is thought to regulate the cell cycle by virtue of its paralogy to cul-1 and cul-2; however, CUL-5 is dispensable for viability and gross morphology in mass RNAi screens, and does not appear to interact with any of 17 Skp1-related proteins (SKR-1 through SKR-21). | Paper_evidence | WBPaper00002473 | |||
WBPaper00005128 | |||||||
WBPaper00005654 | |||||||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Predicted to enable protein-macromolecule adaptor activity and ubiquitin protein ligase binding activity. Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process and protein ubiquitination. Predicted to be part of Cul5-RING ubiquitin ligase complex and SCF ubiquitin ligase complex. Expressed in several structures, including head; intestine; nervous system; tail; and vulval muscle. Is an ortholog of human CUL5 (cullin 5). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | ZK856.1 | |||||
Corresponding_CDS_history | ZK856.1:wp175 | ||||||
Corresponding_transcript | ZK856.1.1 | ||||||
Other_sequence (34) | |||||||
Associated_feature | WBsf647140 | ||||||
WBsf661616 | |||||||
WBsf1001071 | |||||||
Experimental_info | RNAi_result (20) | ||||||
Expr_pattern | Chronogram1562 | ||||||
Expr7264 | |||||||
Expr8294 | |||||||
Expr1024104 | |||||||
Expr1030522 | |||||||
Expr1163196 | |||||||
Expr2010590 | |||||||
Expr2028830 | |||||||
Drives_construct | WBCnstr00002643 | ||||||
WBCnstr00037253 | |||||||
Construct_product | WBCnstr00037253 | ||||||
Microarray_results (18) | |||||||
Expression_cluster (112) | |||||||
Interaction (34) | |||||||
Map_info | Map | V | Position | 2.30976 | Error | 0.009953 | |
Positive | Positive_clone | ZK856 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 5581 | |||||
Pseudo_map_position | |||||||
Reference (13) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |