WormBase Tree Display for Gene: WBGene00000840
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| WBGene00000840 | SMap | S_parent | Sequence | ZK856 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | cul-5 | Person_evidence | WBPerson1052 | |||||
| Sequence_name | ZK856.1 | ||||||||
| Molecular_name | ZK856.1 | ||||||||
| ZK856.1.1 | |||||||||
| CE41096 | |||||||||
| Other_name | CELE_ZK856.1 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | cul-5 | ||||||||
| DB_info | Database | AceView | gene | 5K663 | |||||
| WormQTL | gene | WBGene00000840 | |||||||
| WormFlux | gene | WBGene00000840 | |||||||
| NDB | locus_tag | CELE_ZK856.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000840|UniProtKB=Q23639 | |||||||
| family | PTHR11932 | ||||||||
| NCBI | gene | 179413 | |||||||
| RefSeq | protein | NM_073215.8 | |||||||
| SwissProt | UniProtAcc | Q23639 | |||||||
| TREEFAM | TREEFAM_ID | TF105874 | |||||||
| UniProt_GCRP | UniProtAcc | Q23639 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cul | ||||||||
| Allele (48) | |||||||||
| Strain | WBStrain00001851 | ||||||||
| WBStrain00032168 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00079158 | ||||||||
| 00079159 | |||||||||
| 00079160 | |||||||||
| 00079161 | |||||||||
| 00079162 | |||||||||
| 00079163 | |||||||||
| 00079164 | |||||||||
| 00107887 | |||||||||
| 00107888 | |||||||||
| Contained_in_operon | CEOP5246 | ||||||||
| Ortholog (39) | |||||||||
| Paralog | WBGene00000836 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00000837 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00000838 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00000839 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00000841 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00000143 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | cul-5 encodes a cullin, orthologous to vasopressin-activated calcium-mobilizing receptor-1 in mammals, that is thought to regulate the cell cycle by virtue of its paralogy to cul-1 and cul-2; however, CUL-5 is dispensable for viability and gross morphology in mass RNAi screens, and does not appear to interact with any of 17 Skp1-related proteins (SKR-1 through SKR-21). | Paper_evidence | WBPaper00002473 | |||||
| WBPaper00005128 | |||||||||
| WBPaper00005654 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable protein-macromolecule adaptor activity and ubiquitin protein ligase binding activity. Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process and protein ubiquitination. Predicted to be part of Cul5-RING ubiquitin ligase complex and SCF ubiquitin ligase complex. Expressed in several structures, including head; intestine; nervous system; tail; and vulval muscle. Is an ortholog of human CUL5 (cullin 5). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZK856.1 | |||||||
| Corresponding_CDS_history | ZK856.1:wp175 | ||||||||
| Corresponding_transcript | ZK856.1.1 | ||||||||
| Other_sequence (34) | |||||||||
| Associated_feature | WBsf647140 | ||||||||
| WBsf661616 | |||||||||
| WBsf1001071 | |||||||||
| Experimental_info | RNAi_result (20) | ||||||||
| Expr_pattern | Chronogram1562 | ||||||||
| Expr7264 | |||||||||
| Expr8294 | |||||||||
| Expr1024104 | |||||||||
| Expr1030522 | |||||||||
| Expr1163196 | |||||||||
| Expr2010590 | |||||||||
| Expr2028830 | |||||||||
| Drives_construct | WBCnstr00002643 | ||||||||
| WBCnstr00037253 | |||||||||
| Construct_product | WBCnstr00037253 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (112) | |||||||||
| Interaction | WBInteraction000009242 | ||||||||
| WBInteraction000009243 | |||||||||
| WBInteraction000009245 | |||||||||
| WBInteraction000009247 | |||||||||
| WBInteraction000009249 | |||||||||
| WBInteraction000009250 | |||||||||
| WBInteraction000009251 | |||||||||
| WBInteraction000009252 | |||||||||
| WBInteraction000029178 | |||||||||
| WBInteraction000050833 | |||||||||
| WBInteraction000115618 | |||||||||
| WBInteraction000158023 | |||||||||
| WBInteraction000158025 | |||||||||
| WBInteraction000159224 | |||||||||
| WBInteraction000161047 | |||||||||
| WBInteraction000169128 | |||||||||
| WBInteraction000172998 | |||||||||
| WBInteraction000173003 | |||||||||
| WBInteraction000173005 | |||||||||
| WBInteraction000173006 | |||||||||
| WBInteraction000173009 | |||||||||
| WBInteraction000173011 | |||||||||
| WBInteraction000173015 | |||||||||
| WBInteraction000233525 | |||||||||
| WBInteraction000324414 | |||||||||
| WBInteraction000405463 | |||||||||
| WBInteraction000418534 | |||||||||
| WBInteraction000438403 | |||||||||
| WBInteraction000445794 | |||||||||
| WBInteraction000460711 | |||||||||
| WBInteraction000502741 | |||||||||
| WBInteraction000540886 | |||||||||
| WBInteraction000540903 | |||||||||
| WBInteraction000562624 | |||||||||
| Map_info | Map | V | Position | 2.30976 | Error | 0.009953 | |||
| Positive | Positive_clone | ZK856 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5581 | |||||||
| Pseudo_map_position | |||||||||
| Reference (13) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
