WormBase Tree Display for Gene: WBGene00000819
expand all nodes | collapse all nodes | view schema
| WBGene00000819 | SMap | S_parent | Sequence | Y48E1B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | csp-1 | Person_evidence | WBPerson576 | |||||
| Sequence_name | Y48E1B.13 | ||||||||
| Molecular_name | Y48E1B.13a | ||||||||
| Y48E1B.13a.1 | |||||||||
| CE29378 | |||||||||
| Y48E1B.13b | |||||||||
| CE30016 | |||||||||
| Y48E1B.13c | |||||||||
| CE30017 | |||||||||
| Y48E1B.13b.1 | |||||||||
| Y48E1B.13c.1 | |||||||||
| Other_name | CELE_Y48E1B.13 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | csp-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | csp | ||||||||
| Allele (148) | |||||||||
| Strain | WBStrain00032638 | ||||||||
| WBStrain00027566 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (27) | |||||||||
| Ortholog (42) | |||||||||
| Paralog | WBGene00000417 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000820 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000821 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | The csp-1 gene encodes, by alternative splicing, three caspase homologs that may be involved in apoptosis. | Paper_evidence | WBPaper00004589 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enables cysteine-type endopeptidase activity. Involved in several processes, including negative regulation of cellular response to manganese ion; positive regulation of apoptotic process; and positive regulation of cellular response to gamma radiation. Located in germ cell nucleus. Expressed in germ line. Human ortholog(s) of this gene implicated in several diseases, including Alzheimer's disease; carcinoma (multiple); gastrointestinal system cancer (multiple); and prostate disease (multiple). Is an ortholog of several human genes including CASP3 (caspase 3); CASP6 (caspase 6); and CASP7 (caspase 7). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model (21) | ||||||||
| Molecular_info | Corresponding_CDS | Y48E1B.13a | |||||||
| Y48E1B.13b | |||||||||
| Y48E1B.13c | |||||||||
| Corresponding_CDS_history | Y48E1B.13:wp61 | ||||||||
| Y48E1B.13:wp63 | |||||||||
| Corresponding_transcript | Y48E1B.13a.1 | ||||||||
| Y48E1B.13b.1 | |||||||||
| Y48E1B.13c.1 | |||||||||
| Other_sequence | AF088285 | ||||||||
| CN477275.1 | |||||||||
| BM01125 | |||||||||
| CN478291.1 | |||||||||
| MJ04766 | |||||||||
| MP01623 | |||||||||
| Associated_feature | WBsf990465 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00097834 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00056914 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00097835 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027848 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr10790 | ||||||||
| Expr1019311 | |||||||||
| Expr1160361 | |||||||||
| Expr2010557 | |||||||||
| Expr2028797 | |||||||||
| Construct_product | WBCnstr00017125 | ||||||||
| WBCnstr00017126 | |||||||||
| WBCnstr00017127 | |||||||||
| WBCnstr00017128 | |||||||||
| WBCnstr00017129 | |||||||||
| WBCnstr00017130 | |||||||||
| WBCnstr00020166 | |||||||||
| Microarray_results (30) | |||||||||
| Expression_cluster (87) | |||||||||
| Interaction (65) | |||||||||
| Map_info | Map | II | Position | 18.6394 | Error | 0.056422 | |||
| Positive | Positive_clone | Y48E1B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4842 | |||||||
| 4806 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (25) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
