WormBase Tree Display for Gene: WBGene00000756

WBGene00000756 Evidence: Person_evidence: WBPerson345
      WBPerson651
  SMap: S_parent: Sequence: F02D10
  Identity: Version: 1
    Name: CGC_name: col-183 Person_evidence: WBPerson345
      Sequence_name: F02D10.1
      Molecular_name: F02D10.1
        F02D10.1.1
        CE03136
      Other_name: CELE_F02D10.1 Accession_evidence: NDB BX284606
      Public_name: col-183
    DB_info: Database: AceView gene XO82
        WormQTL gene WBGene00000756
        WormFlux gene WBGene00000756
        NDB locus_tag CELE_F02D10.1
        Panther gene CAEEL|WormBase=WBGene00000756|UniProtKB=Q19111
          family PTHR24637
        NCBI gene 184081
        RefSeq protein NM_077846.3
        TrEMBL UniProtAcc Q19111
        UniProt_GCRP UniProtAcc Q19111
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:21 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: col
    Allele (22)
    RNASeq_FPKM (74)
    GO_annotation: 00063462
      00063463
      00063464
      00107741
    Ortholog (22)
    Paralog (163)
    Structured_description: Automated_description: Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. Expressed in hypodermis. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F02D10.1
    Corresponding_transcript: F02D10.1.1
    Other_sequence (30)
  Experimental_info: RNAi_result: WBRNAi00061090 Inferred_automatically: RNAi_primary
      WBRNAi00061088 Inferred_automatically: RNAi_primary
      WBRNAi00061087 Inferred_automatically: RNAi_primary
      WBRNAi00027257 Inferred_automatically: RNAi_primary
      WBRNAi00025005 Inferred_automatically: RNAi_primary
      WBRNAi00012771 Inferred_automatically: RNAi_primary
      WBRNAi00061089 Inferred_automatically: RNAi_primary
      WBRNAi00043802 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr14948
      Expr14949
      Expr1026675
      Expr1030463
      Expr1147776
      Expr2010378
      Expr2028620
      Marker124
    Drives_construct: WBCnstr00037302
      WBCnstr00041032
    Construct_product: WBCnstr00037302
    Microarray_results (16)
    Expression_cluster: WBPaper00029087:4-methylsterol_upregulated
      WBPaper00031040:TGF-beta_adult_upregulated
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00038237:age-1_upregulated_intestine_rescue
      WBPaper00038237:age-1_upregulated_neuron_rescue
      WBPaper00038237:age-1_upregulated_nontransgenic
      WBPaper00038438:D.coniospora_12hr_upregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_downregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_downregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
      WBPaper00044316:CH3HgCl_7.5uM_downregulated
      WBPaper00044426:rotenone_5day_downregulated
      WBPaper00045316:prg-1_upregulated_L1
      WBPaper00045401:N.parisii_64h_downregulated
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045571:germline-ablation_upregulated
      WBPaper00045774:clk-1_upregulated
      WBPaper00045934:wrn-1(gk99)_downregulated
      WBPaper00046337:polysomal_daf-2_vs_daf-2;daf-16_downregulated
      WBPaper00046337:polysomal_N2_vs_daf-2_downregulated
      WBPaper00048423:LP133_LF21_upregulated
      WBPaper00049368:daf-2(e1370)_upregulated
      WBPaper00049377:MWCNT_downregulated
      WBPaper00049635:dop-1(vs100)_downregulated
      WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr)
      WBPaper00049942:HeatShock_upregulated_hsf-1(+)
      WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)
      WBPaper00049942:hsf-1(RNAi)_upregulated
      WBPaper00050234:lin-28(RNAi)_downregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050801:DAF-12_dauer_regulome
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050801:DPY-21_dauer_regulome
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:seam_expressed
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053318:Aging_upregulated_mRNA_N2
      WBPaper00053318:mir-71(n4115)_upregulated_mRNA
      WBPaper00053388:dauer_regulated_Cluster4
      WBPaper00053771:up_at_24h-NaCl
      WBPaper00053810:daf-2(e1370)_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00054493:hpl-2(tm1489)_downregulated
      WBPaper00054758:alg-1(gk204)_downregulated
      WBPaper00054796:cav-1(RNAi)_downregulated
      WBPaper00055013:hmg-3(bar24)_upregulated
      WBPaper00055226:adr-1(tm668)_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Psora_downregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Psora_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rifampicin-Psora_downregulated
      WBPaper00055354:Rifampicin_downregulated
      WBPaper00055386:daf-2(e1370)_upregulated
      WBPaper00055565:AVK_enriched
      WBPaper00055827:daf-2(e1370)_upregulated
      WBPaper00055897:heat-shock_upregulated
      WBPaper00055944:C.butyricum_vs_OP50_downregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected
      WBPaper00056443:DietaryRestriction_downregulated
      WBPaper00056443:sek-1(km4)_downregulated
      WBPaper00056809:smn-1(ok355)_upregulated
      WBPaper00057006:DietaryRestriction_downregulated
      WBPaper00058711:wdr-5(ok1417)_upregulated
      WBPaper00059253:sucrose_stearic-acid_downregulated
      WBPaper00059356:set-6(ok2195)_baz-2(tm0235)_regulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060445:ikb-1(nr2027)_downregulated_L4
      WBPaper00060445:nfki-1(cer1)_ikb-1(nr2027)_downregulated_L4
      WBPaper00060661:hypoxia_upregulated
      WBPaper00060703:nas-38(ok3407)_upregulated
      WBPaper00061040:eat-2(ad1116)_downregulated
      WBPaper00061340:G2_and_W_blasts
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061357:mett-10(ok2204)_downregulated_NA22
      WBPaper00061527:col-84-col-45
      WBPaper00061530:nhr-49(e2144)_downregulated
      WBPaper00061952:daf-18(nr2037)_downregulated
      WBPaper00061952:daf-18(yh1)_downregulated
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
      WBPaper00062590:Aging_upregulated_body-wall-muscle
      WBPaper00062590:Aging_upregulated_hypodermis
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064494:postdauer_downregulated_AWA
      WBPaper00064494:postdauer_downregulated_WholeAnimal
      WBPaper00064632:daf-2(e1370)_upregulated_intestine
      WBPaper00065096:npr-8(ok1439)_upregulated_Day10_20C
      WBPaper00065096:npr-8(ok1439)_upregulated_Day10_25C
      WBPaper00065315:mating_downregulated_Day2-7
      WBPaper00065315:mating_downregulated_Day6-7
      WBPaper00065581:hpk-1(pk1393)_downregulated
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
      cgc4386_cluster_2_2
      cgc4489_group_9
      WBPaper00005124:progesterone_10-7M_regulated
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00030985:Serratia_marcesens_upregulated
      WBPaper00032062:age_regulated_genes
      WBPaper00036130:mir-243_up_regulated
      WBPaper00036286:Pattern_D
      WBPaper00036375:depleted_in_PVD_OLL
      WBPaper00038172:tax-6null_up_regulated
      WBPaper00041002:HF_11d_0.2mM_Up
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00042331:a-SWCNTs_downregulated
      WBPaper00045015:nhr-25(RNAi)_upregulated
      WBPaper00047070:DAF-16-dependent_UV_response
      WBPaper00049311:AgNO3_regulated
      WBPaper00055899:2,4-Dinitroanisole_regulated
    Interaction (62)
  Map_info: Map: X Position: 12.5898
    Positive: Positive_clone: F02D10 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00025088
    WBPaper00026769
    WBPaper00056939
    WBPaper00057488
    WBPaper00061667
    WBPaper00063927
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene