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WormBase Tree Display for Gene: WBGene00000622

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Name Class

WBGene00000622EvidencePerson_evidenceWBPerson345
WBPerson651
SMapS_parentSequenceF53G12
IdentityVersion1
NameCGC_namecol-45Person_evidenceWBPerson345
Sequence_nameF53G12.7
Molecular_nameF53G12.7a
F53G12.7a.1
CE11018
F53G12.7b
CE49336
F53G12.7b.1
Other_nameCELE_F53G12.7Accession_evidenceNDBBX284601
Public_namecol-45
DB_infoDatabaseAceViewgene1A589
WormQTLgeneWBGene00000622
WormFluxgeneWBGene00000622
NDBlocus_tagCELE_F53G12.7
PanthergeneCAEEL|WormBase=WBGene00000622|UniProtKB=O01799
familyPTHR24637
NCBIgene171605
RefSeqproteinNM_001306335.3
NM_058278.4
TrEMBLUniProtAccO01799
V6CM19
UniProt_GCRPUniProtAccO01799
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:21WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcol
Allele (41)
StrainWBStrain00055323
RNASeq_FPKM (74)
GO_annotation00025678
00025679
00025680
00107630
Ortholog (28)
Paralog (161)
Structured_descriptionConcise_descriptioncol-45 encodes a cuticle collagen.Curator_confirmedWBPerson1843
Date_last_updated03 Apr 2007 00:00:00
Automated_descriptionPredicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF53G12.7a
F53G12.7b
Corresponding_transcriptF53G12.7a.1
F53G12.7b.1
Other_sequenceFG978022.1
JI173390.1
SS00194
CJC04034_1
JI482112.1
SSC02700_1
CBC09960_1
Oden_isotig21919
CJC05625_1
Associated_featureWBsf982402
WBsf982403
WBsf1009030
WBsf217099
Experimental_infoRNAi_resultWBRNAi00048172Inferred_automaticallyRNAi_primary
WBRNAi00003758Inferred_automaticallyRNAi_primary
WBRNAi00032713Inferred_automaticallyRNAi_primary
Expr_patternExpr1025856
Expr1030366
Expr1151987
Expr2010398
Expr2028640
Microarray_results (19)
Expression_clusterWBPaper00032031:DConiospora_downregulated_cDNA_24h
WBPaper00032031:DConiospora_downregulated_OligoArray_24h
WBPaper00032528:L3_depleted
WBPaper00035269:cde-1_regulated
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00038237:age-1_upregulated_intestine_rescue
WBPaper00038237:age-1_upregulated_neuron_rescue
WBPaper00038237:age-1_upregulated_nontransgenic
WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
WBPaper00040221:DAF-12_target_ALF4
WBPaper00044578:reduced-humidity_downregulated_microarray
WBPaper00045017:blmp-1(tm548)_upregulated
WBPaper00045417:128Q-huntingtin_downreglated
WBPaper00045521:Spermatogenic
WBPaper00045571:germline-ablation_upregulated
WBPaper00045934:wrn-1(gk99)_downregulated
WBPaper00046337:monosomal_N2_vs_daf-2_downregulated
WBPaper00046337:polysomal_daf-2_vs_daf-2;daf-16_downregulated
WBPaper00046337:polysomal_N2_vs_daf-2_downregulated
WBPaper00046805:csr-1(RNAi)_upregulated_Set1
WBPaper00046805:P-granule-RNAi_upregulated_Set1
WBPaper00049377:MWCNT_downregulated
WBPaper00049942:HeatShock_upregulated_hsf-1(+)
WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050096:P.aeruginosa_downregulated
WBPaper00050193:met-2(n4256)set-25(n5021)_upregulated_L1
WBPaper00050344:AFD-neuron_enriched
WBPaper00050344:ASER-neuron_enriched
WBPaper00050344:PLM-neuron_enriched
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050801:DAF-12_dauer_regulome
WBPaper00050801:DAF-16_dauer_regulome
WBPaper00050801:DPY-21_dauer_regulome
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:seam_expressed
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053295:lin-22(ot269)_upregulated
WBPaper00053388:dauer_regulated_Cluster3
WBPaper00053599:female_vs_male_downregulated
WBPaper00053599:oocyte_vs_mitosis_upregulated
WBPaper00053771:up_at_24h-NaCl
WBPaper00053810:daf-2(e1370)_upregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00054758:alg-1(gk204)_upregulated
WBPaper00055226:adr-1(tm668)_upregulated
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
WBPaper00055354:Rapamycin-Rifampicin_downregulated
WBPaper00055354:Rapamycin_downregulated
WBPaper00055354:Rifampicin-Psora_downregulated
WBPaper00055565:AVK_enriched
WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected
WBPaper00056809:smn-1(ok355)_upregulated
WBPaper00056826:hmc_biased
WBPaper00057068:ints-4(RNAi)_upregulated
WBPaper00057140:meg-3(tm4259)_meg-4(ax2026)_downregulated
WBPaper00057158:mdt-15(tm2182)_dependent_15C_downregulated
WBPaper00059117:B.subtilis_downregulated
WBPaper00059253:sucrose_downregulated
WBPaper00059253:sucrose_stearic-acid_downregulated
WBPaper00060014:set-2(tm1630)_upregulated
WBPaper00060526:plp-1(ok2155)_upregulated
WBPaper00060886:spr-5(by101);met-2(n4256)_upregulated
WBPaper00060886:spr-5(by101)_upregulated
WBPaper00061274:hypergravity_15xg_downregulated
WBPaper00061341:28C_24h_upregulated
WBPaper00061341:28C_48h_upregulated
WBPaper00061357:mett-10(ok2204)_upregulated_OP50
WBPaper00061479:hda-1(ne4752)_upregulated
WBPaper00061527:col-84-col-45
WBPaper00061530:nhr-49(e2144)_downregulated
WBPaper00061753:csr-1(tor159)_downregulated_20C
WBPaper00062056:lin-15B(n744)_upregulated
WBPaper00062056:lin-35(n745)_upregulated
WBPaper00062193:skn-1(RNAi)_upregulated
WBPaper00062672:dcp-66(RNAi)_upregulated
WBPaper00062672:let-418(n3536)dcp-66(RNAi)_upregulated
WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064107:lin-52(3A)_vs_lin-52(WT)_upregulated
WBPaper00064122:vulva_transcriptome
WBPaper00064315:mrg-1(qa6200)_downregulated_PGCs
WBPaper00064494:postdauer_downregulated_WholeAnimal
WBPaper00065032:PAO1_vs_Delt.Pf4-infection_downregulated
WBPaper00065096:npr-8(ok1439)_upregulated_Day10_20C
WBPaper00065096:npr-8(ok1439)_upregulated_Day10_25C
WBPaper00065149:lin-52(n771)_upregulated
cgc4386_cluster_2_4
cgc4489_group_9
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00030985:Enterococcus_faecalis_downregulated
WBPaper00030985:Photorhabdus_luminescens_downregulated
WBPaper00031532:Larva_Pan_Neuronal_Depleted
WBPaper00032062:age_regulated_genes
WBPaper00035588:alg-1(-)_upregulated
WBPaper00036123:Atrazine_regulated
WBPaper00036286:Pattern_D
WBPaper00036375:depleted_in_PVD_OLL
WBPaper00040210:Diazinon_24C_regulated
WBPaper00040858:eQTL_age_regulated_aging
WBPaper00040963:Q100_up
WBPaper00040963:Q200_up
WBPaper00041267:SpaceFlight_Downregulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_EtBr-exposed_51h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:control_vs_UVC-exposed_48h
WBPaper00041939:control_vs_UVC-exposed_51h
WBPaper00045015:acs-3(ft5)_downregulated
WBPaper00045015:nhr-25(RNAi)_downregulated
WBPaper00045865:biofilm_downregulated_B
WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
WBPaper00049311:AgNO3_regulated
WBPaper00049311:sAg-MNP_regulated
[cgc6390]:male_soma-enriched
Interaction (39)
Map_infoMapIPosition-19.4132Error0.101414
PositivePositive_cloneF53G12Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038491
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene