WormBase Tree Display for Gene: WBGene00000592
expand all nodes | collapse all nodes | view schema
WBGene00000592 | Evidence | CGC_data_submission | |||||
---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F08H9 | ||||
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | coh | ||||||
Allele (53) | |||||||
Legacy_information | [J. Loidl] no RNAi phenotype found. Name assigned on the basis of sequence homology | ||||||
(F08H9.1) is homolog to the Rad21/Scc1/Rec8 family of cohesion proteins with known members in C. elegans, S. cerevisiae, S. pombe, A. thaliana and vertebrates. R-S-R is the acronym of the founder family | |||||||
Strain | WBStrain00035161 | ||||||
WBStrain00035162 | |||||||
WBStrain00035163 | |||||||
WBStrain00035164 | |||||||
WBStrain00035528 | |||||||
WBStrain00055740 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00063986 | ||||||
Ortholog (20) | |||||||
Paralog | WBGene00021560 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Inparanoid_8 | |||||||
WormBase-Compara | |||||||
Structured_description | Concise_description | coh-3 encodes a member of the Rad21/Rec8-like family of cohesion proteins known as kleisins; COH-3, along with its paralogs REC-8 and COH-4, function as members of a meiotic cohesin complex that mediates sister chromatid cohesion; coh-3 transcripts are expressed in the germline. | Paper_evidence | WBPaper00004722 | |||
WBPaper00005330 | |||||||
WBPaper00005486 | |||||||
WBPaper00005654 | |||||||
WBPaper00034684 | |||||||
Curator_confirmed | WBPerson48 | ||||||
WBPerson1843 | |||||||
Date_last_updated | 29 Nov 2010 00:00:00 | ||||||
Automated_description | Involved in meiotic sister chromatid cohesion. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F08H9.1 | |||||
Corresponding_CDS_history | F08H9.1:wp111 | ||||||
Corresponding_transcript | F08H9.1.1 | ||||||
Other_sequence | CR12282 | ||||||
CRC05466_1 | |||||||
CBC13933_1 | |||||||
Associated_feature | WBsf1002022 | ||||||
WBsf1002023 | |||||||
WBsf1002024 | |||||||
WBsf1020844 | |||||||
WBsf1020845 | |||||||
Experimental_info | RNAi_result (15) | ||||||
Expr_pattern | Expr11960 | ||||||
Expr1027870 | |||||||
Expr1030347 | |||||||
Expr1148024 | |||||||
Expr2010298 | |||||||
Expr2028540 | |||||||
Drives_construct | WBCnstr00037442 | ||||||
Construct_product | WBCnstr00037442 | ||||||
Antibody | WBAntibody00002562 | ||||||
WBAntibody00002687 | |||||||
Microarray_results (19) | |||||||
Expression_cluster (123) | |||||||
Interaction (28) | |||||||
Map_info | Map | V | Position | 6.41169 | Error | 0.006664 | |
Positive | Positive_clone | F08H9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 4170 | |||||
4233 | |||||||
Pseudo_map_position | |||||||
Reference (22) | |||||||
Remark | Sequence connection from [Loidl J] | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |