WormBase Tree Display for Gene: WBGene00021560
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WBGene00021560 | SMap | S_parent | Sequence | Y45G5AM | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | coh-4 | Person_evidence | WBPerson574 | |||||
Sequence_name | Y45G5AM.8 | ||||||||
Molecular_name | Y45G5AM.8a | ||||||||
Y45G5AM.8a.1 | |||||||||
CE27409 | |||||||||
Y45G5AM.8b | |||||||||
CE51569 | |||||||||
Y45G5AM.8c | |||||||||
CE51556 | |||||||||
Y45G5AM.8b.1 | |||||||||
Y45G5AM.8c.1 | |||||||||
Other_name | CELE_Y45G5AM.8 | Accession_evidence | NDB | BX284605 | |||||
Public_name | coh-4 | ||||||||
DB_info | Database | AceView | gene | 5E652 | |||||
WormQTL | gene | WBGene00021560 | |||||||
WormFlux | gene | WBGene00021560 | |||||||
NDB | locus_tag | CELE_Y45G5AM.8 | |||||||
NCBI | gene | 178818 | |||||||
RefSeq | protein | NM_001330833.3 | |||||||
NM_071760.3 | |||||||||
NM_001330834.3 | |||||||||
TrEMBL | UniProtAcc | A0A168HB71 | |||||||
Q95XJ4 | |||||||||
A0A163UTM2 | |||||||||
UniProt_GCRP | UniProtAcc | Q95XJ4 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 30 Mar 2009 16:33:08 | WBPerson9133 | Name_change | CGC_name | coh-4 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | coh | ||||||||
Allele (163) | |||||||||
Strain | WBStrain00035161 | ||||||||
WBStrain00035162 | |||||||||
WBStrain00035163 | |||||||||
WBStrain00035164 | |||||||||
WBStrain00055740 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00089042 | ||||||||
Contained_in_operon | CEOP5562 | ||||||||
Ortholog (20) | |||||||||
Paralog | WBGene00000592 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | coh-4 encodes a member of the Rad21/Rec8-like family of cohesion proteins known as kleisins; COH-4, along with its paralogs REC-8 and COH-3, function as members of a meiotic cohesin complex that mediates sister chromatid cohesion. | Paper_evidence | WBPaper00034684 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 29 Nov 2010 00:00:00 | ||||||||
Automated_description | Involved in meiotic sister chromatid cohesion. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y45G5AM.8a | |||||||
Y45G5AM.8b | |||||||||
Y45G5AM.8c | |||||||||
Corresponding_transcript | Y45G5AM.8a.1 | ||||||||
Y45G5AM.8b.1 | |||||||||
Y45G5AM.8c.1 | |||||||||
Associated_feature | WBsf668649 | ||||||||
WBsf668856 | |||||||||
WBsf668857 | |||||||||
WBsf999747 | |||||||||
WBsf999748 | |||||||||
WBsf999749 | |||||||||
WBsf1019467 | |||||||||
WBsf233561 | |||||||||
Experimental_info | RNAi_result | WBRNAi00056638 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr11961 | ||||||||
Expr1039438 | |||||||||
Expr1160110 | |||||||||
Expr2010299 | |||||||||
Expr2028541 | |||||||||
Antibody | WBAntibody00002562 | ||||||||
WBAntibody00002687 | |||||||||
Microarray_results (12) | |||||||||
Expression_cluster (94) | |||||||||
Interaction | WBInteraction000554911 | ||||||||
WBInteraction000560270 | |||||||||
WBInteraction000583689 | |||||||||
WBInteraction000584069 | |||||||||
Map_info | Map | V | Position | -6.34419 | Error | 0.01466 | |||
Positive | Positive_clone | Y45G5AM | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference (15) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |