WormBase Tree Display for Gene: WBGene00000496
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WBGene00000496 | SMap | S_parent | Sequence | T25G3 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | chs-1 | Person_evidence | WBPerson50 | |||||
Sequence_name | T25G3.2 | ||||||||
Molecular_name | T25G3.2 | ||||||||
T25G3.2.1 | |||||||||
CE39183 | |||||||||
T25G3.2.2 | |||||||||
Other_name | chi-1 | CGC_data_submission | |||||||
chs-2 | |||||||||
CELE_T25G3.2 | Accession_evidence | NDB | BX284601 | ||||||
Public_name | chs-1 | ||||||||
DB_info | Database (12) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 05 Jul 2004 10:20:16 | WBPerson1971 | Name_change | CGC_name | chs-1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | chs | ||||||||
Allele (57) | |||||||||
Strain | WBStrain00031890 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (26) | |||||||||
Contained_in_operon | CEOP1400 | ||||||||
Ortholog (42) | |||||||||
Paralog | WBGene00000497 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
Structured_description | Concise_description | chs-1 encodes a chitin synthase, paralogous to CHS-2; chs-1 is requiredfor embryonic chitin synthesis, eggshell synthesis and osmoticintegrity, error-free chromosomal segregation during meiosis, polar bodyextrusion, association of the sperm pronucleus/centrosome complex (SPCC)with the early embryonic cortex, localization of PAR-2 in early embryos,posterior localization of P granules or PIE-1, and pseudocleavage; CHS-1is also, independently of chitin synthesis, required for normallocalization of MBK-2 to cortex and punctae in early embryos; CHS-1 isdispensable for synthesis of pharyngeal cuticle, since chs-1(ok1120)mutants have it normally; CHS-1 localizes to the oocyte plasma membrane and .cell cortex | Paper_evidence | WBPaper00004881 | |||||
WBPaper00006390 | |||||||||
WBPaper00012846 | |||||||||
WBPaper00026721 | |||||||||
WBPaper00028588 | |||||||||
WBPaper00029233 | |||||||||
WBPaper00031014 | |||||||||
WBPaper00035426 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
WBPerson567 | |||||||||
Date_last_updated | 16 Nov 2010 00:00:00 | ||||||||
Automated_description | Predicted to enable chitin synthase activity. Involved in cell wall chitin biosynthetic process; eggshell formation; and positive regulation of protein localization to cell cortex. Located in cell cortex and plasma membrane. Expressed in Psub1. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | T25G3.2 | |||||||
Corresponding_CDS_history | T25G3.2:wp149 | ||||||||
Corresponding_transcript | T25G3.2.1 | ||||||||
T25G3.2.2 | |||||||||
Other_sequence (54) | |||||||||
Associated_feature | WBsf643461 | ||||||||
WBsf643462 | |||||||||
WBsf656537 | |||||||||
WBsf656538 | |||||||||
WBsf218023 | |||||||||
WBsf218024 | |||||||||
Experimental_info | RNAi_result (17) | ||||||||
Expr_pattern | Expr3655 | ||||||||
Expr4906 | |||||||||
Expr11042 | |||||||||
Expr14401 | |||||||||
Expr1011456 | |||||||||
Expr1030292 | |||||||||
Expr1157706 | |||||||||
Expr2009999 | |||||||||
Expr2028240 | |||||||||
Drives_construct | WBCnstr00011576 | ||||||||
WBCnstr00037497 | |||||||||
Construct_product | WBCnstr00001287 | ||||||||
WBCnstr00019030 | |||||||||
WBCnstr00037497 | |||||||||
Microarray_results (19) | |||||||||
Expression_cluster (168) | |||||||||
Interaction (188) | |||||||||
Map_info | Map | I | Position | 2.13842 | Error | 0.012536 | |||
Positive | Positive_clone | T25G3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 4887 | |||||||
5298 | |||||||||
Pseudo_map_position | |||||||||
Reference (23) | |||||||||
Remark | Gene was renamed from chi-1 to chs-1 at request of CGC, note that the other name 'chs-2' is from the Brugia malayi ortholog...this ortholog may be renamed in the future to clarify the situation. | CGC_data_submission | |||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |