Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00000484

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00000484EvidenceCGC_data_submission
SMapS_parentSequenceF38G1
IdentityVersion1
NameCGC_nameche-2Person_evidenceWBPerson261
Sequence_nameF38G1.1
Molecular_nameF38G1.1
F38G1.1.1
CE25876
Other_nameCELE_F38G1.1Accession_evidenceNDBBX284606
Public_nameche-2
DB_infoDatabase (12)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:21WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classche
Reference_alleleWBVar00143695
Allele (93)
Legacy_informatione1033 : non-chemotactic to sodium ion slightly small defective osmotic avoidance defective dauer formation males impotent; no FITC uptake; ciliated neurons have abnormal stunted ultrastructure. ES2 ME0. NA1.
See also e1033
[C.elegansII] e1033 : non-chemotactic to sodium ion; slightly small; defective osmotic avoidance; defective dauer formation; males impotent; Dyf (no FITC uptake); ciliated neurons have abnormal stunted ultrastructure. ES2. ME0.OA5: m127, mn330mut, mn395 etc. [Lewis and Hodgkin 1977; Starich et al. 1995; DR; SP; NJ]
StrainWBStrain00030520
WBStrain00030521
WBStrain00004231
WBStrain00006208
RNASeq_FPKM (74)
GO_annotation (19)
OrthologWBGene00060282Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00034384Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00140082Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00133923Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00224182Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g10934Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g2867Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g16596Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g16597Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g13430Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g20731Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g4781Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g4782Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g16567Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g14620Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g27734Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g23320Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00929.g14977Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-che-2Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g18136Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold630.g18137Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_02026.g24449Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_04297.g32576Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_10256.g39930Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_03253Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_022157Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g11343Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g21659Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0021300Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g18279Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00239627Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00089620Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00264497Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00285916Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0032891Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-041212-50Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:29262Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1915509Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1312006Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
Structured_descriptionConcise_descriptionche-2 encodes a protein that contains G-protein beta-like WD-40 repeats that affects chemotaxis, dauer formation, and longevity; expressed in the cilia of most ciliated sensory neurons, some head neurons, and male tail rays.Paper_evidenceWBPaper00001482
WBPaper00001786
WBPaper00002033
WBPaper00003761
WBPaper00003977
WBPaper00004692
WBPaper00005596
Curator_confirmedWBPerson48
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionInvolved in several processes, including dauer larval development; negative regulation of transforming growth factor beta receptor signaling pathway; and positive regulation of locomotion involved in locomotory behavior. Located in ciliary basal body and non-motile cilium. Expressed in neurons. Human ortholog(s) of this gene implicated in asphyxiating thoracic dystrophy 2. Is an ortholog of human IFT80 (intraflagellar transport 80).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0110086Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:29262)
Molecular_infoCorresponding_CDSF38G1.1
Corresponding_transcriptF38G1.1.1
Other_sequenceAcan_isotig12713
JI226764.1
Associated_featureWBsf042305
WBsf647785
WBsf1003791
WBsf235268
Experimental_infoRNAi_resultWBRNAi00014580Inferred_automaticallyRNAi_primary
WBRNAi00068042Inferred_automaticallyRNAi_primary
WBRNAi00067404Inferred_automaticallyRNAi_primary
WBRNAi00067940Inferred_automaticallyRNAi_primary
WBRNAi00046733Inferred_automaticallyRNAi_primary
Expr_patternExpr1157
Expr10123
Expr1024294
Expr1030285
Expr1150609
Expr2009965
Expr2028205
Drives_construct (17)
Construct_product (11)
Microarray_results (20)
Expression_cluster (153)
Interaction (81)
Map_infoMapXPosition-19.7593Error0.046333
Well_ordered
PositivePositive_cloneF38G1Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_data2_point3385
Multi_point1213
1585
1856
2320
2431
2432
4432
Pos_neg_data5455
5461
5466
5470
5474
5478
5482
5486
5490
5494
Reference (127)
RemarkSequence connection from [Fujiwara M, Katsura I]
MethodGene