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WormBase Tree Display for Gene: WBGene00034384

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Name Class

WBGene00034384SMapS_parentSequencecb25.fpc3441
IdentityVersion2
NameCGC_nameCbr-che-2From_analysisInferred_from_orthology
Sequence_nameCBG13647
Molecular_nameCBG13647a
CBG13647a.1
CBP09418
CBG13647b
CBP44645
CBG13647b.1
Other_nameCBG_13647Accession_evidenceNDBHE601170
Public_nameCbr-che-2
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:04WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-che-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classche
Allele (33)
RNASeq_FPKMWBls:00000020.905865From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
1.22187From_analysisRNASeq.briggsae.WBls:0000002.control_mean
1.35227From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
1.40749From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
0.27965From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
0.986319From_analysisRNASeq.briggsae.WBls:0000002.control_mean
1.12907From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:00000030.47345From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
0.49104From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.508631From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0.25853From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
0.413537From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:00000043.87942From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
3.93384From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
3.98826From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
3.19387From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
3.42208From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
3.89791From_analysisRNASeq.briggsae.WBls:0000004.control_mean
5.00594From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.461098From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
1.51795From_analysisRNASeq.briggsae.WBls:0000027.control_mean
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
4.09276From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
1.19816From_analysisRNASeq.briggsae.WBls:0000027.control_median
1.62227From_analysisRNASeq.briggsae.WBls:0000027.control_mean
1.93523From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000351.58107From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.169982From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
1.17651From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
1.53739From_analysisRNASeq.briggsae.WBls:0000038.control_median
1.56032From_analysisRNASeq.briggsae.WBls:0000038.control_mean
1.89827From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
2.9965From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:00000410.148856From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.323668From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
0.375665From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.427661From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.482976From_analysisRNASeq.briggsae.WBls:0000041.control_mean
1.03172From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
0.656286From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.678143From_analysisRNASeq.briggsae.WBls:0000041.control_mean
0.884912From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
1.25204From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630.251175From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0.410371From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.450411From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0.465376From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.539334From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.675588From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0.368449From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
0.430391From_analysisRNASeq.briggsae.WBls:0000063.control_median
0.449221From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:00001010.905865From_analysisRNASeq.briggsae.total_over_all_stages.control_median
1.59019From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
0.968792From_analysisRNASeq.briggsae.total_over_all_stages.control_median
1.65042From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (34)
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: WD40/YVTN repeat-like-containing domain superfamily; WD domain, G-beta repeat; WD40 repeat; and WD40-repeat-containing domain superfamily. Is an ortholog of C. elegans che-2. In C. elegans, che-2 is involved in several processes, including dauer larval development; negative regulation of transforming growth factor beta receptor signaling pathway; and positive regulation of locomotion involved in locomotory behavior.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG13647a
CBG13647b
Corresponding_transcriptCBG13647a.1
CBG13647b.1
Other_sequenceJI226764.1
PPC20946_1
Experimental_infoExpr_patternExpr1063188
Microarray_resultsGPL8303_CB6_WBGene00034384_A
GPL14143_CBG13647_723-782_0.821_111_B
GPL14143_CBG13647_968-1027_0.748_178_A
GPL14143_CBG13647_2004-2063_0.942_2_C
ReferenceWBPaper00063946
MethodGene