WormBase Tree Display for Gene: WBGene00000482
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WBGene00000482 | SMap | S_parent | Sequence | CHROMOSOME_X | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | chd | ||||||
Allele (121) | |||||||
Strain | WBStrain00032145 | ||||||
WBStrain00008565 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (36) | |||||||
Ortholog (44) | |||||||
Paralog (19) | |||||||
Structured_description | Concise_description | chd-3 encodes a PHD-finger SNF2 family member containing a chromo domain and a C-terminal helicase domain that affects Notch-dependent vulval development; expressed in virtually all embryonic cells and in many larval nuclei. | Paper_evidence | WBPaper00004171 | |||
WBPaper00004491 | |||||||
WBPaper00018132 | |||||||
Curator_confirmed | WBPerson48 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Predicted to enable several functions, including ATP hydrolysis activity; ATP-dependent activity, acting on DNA; and chromatin binding activity. Involved in cell fate determination; negative regulation of Ras protein signal transduction; and negative regulation of vulval development. Predicted to be located in nucleus. Predicted to be part of NuRD complex. Expressed in several structures, including distal tip cell; pharynx; ventral nerve cord; vulva; and vulval precursor cell. Human ortholog(s) of this gene implicated in gastrointestinal system cancer (multiple); lung adenocarcinoma; and lymphoma. Is an ortholog of human CHD3 (chromodomain helicase DNA binding protein 3). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Potential_model | DOID:9256 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1919) | ||
DOID:1993 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1919) | ||||
DOID:3910 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1919) | ||||
DOID:1324 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1919) | ||||
DOID:234 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1919) | ||||
DOID:0060058 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1919) | ||||
DOID:684 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:16816,HGNC:1919) | ||||
Molecular_info | Corresponding_CDS | T14G8.1 | |||||
Corresponding_transcript | T14G8.1.1 | ||||||
Other_sequence (39) | |||||||
Associated_feature | WBsf655713 | ||||||
WBsf671155 | |||||||
WBsf671156 | |||||||
WBsf671157 | |||||||
WBsf1007448 | |||||||
WBsf1024138 | |||||||
WBsf238087 | |||||||
Experimental_info | RNAi_result | WBRNAi00018728 | Inferred_automatically | RNAi_primary | |||
WBRNAi00053345 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00075564 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00070008 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00081570 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00113476 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00035580 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1044 | ||||||
Expr9223 | |||||||
Expr1020503 | |||||||
Expr1030284 | |||||||
Expr1156930 | |||||||
Expr2009956 | |||||||
Expr2028196 | |||||||
Drives_construct | WBCnstr00010045 | ||||||
WBCnstr00013809 | |||||||
WBCnstr00037504 | |||||||
WBCnstr00038090 | |||||||
Construct_product | WBCnstr00037504 | ||||||
WBCnstr00038090 | |||||||
Regulate_expr_cluster (8) | |||||||
Antibody | WBAntibody00002259 | ||||||
Microarray_results (18) | |||||||
Expression_cluster (184) | |||||||
Interaction (66) | |||||||
Map_info | Map | X | Position | 8.51882 | Error | 0.073253 | |
Positive | Positive_clone | T14G8 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Mapping_data | Multi_point | 4215 | |||||
4883 | |||||||
5508 | |||||||
Pseudo_map_position | |||||||
Reference (38) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |