| WBGene00000461 | SMap | S_parent | Sequence | F17A2 |
|---|
| Identity | Version | 1 |
| | Name | CGC_name | ceh-40 | Person_evidence | WBPerson83 |
| | | Sequence_name | F17A2.5 |
| | | Molecular_name | F17A2.5 |
| | | | F17A2.5.1 |
| | | | CE03215 |
| | | Other_name | CELE_F17A2.5 | Accession_evidence | NDB | BX284606 |
| | | Public_name | ceh-40 |
| | DB_info | Database | AceView | gene | XM934 |
| | | | WormQTL | gene | WBGene00000461 |
| | | | WormFlux | gene | WBGene00000461 |
| | | | NDB | locus_tag | CELE_F17A2.5 |
| | | | Panther | gene | CAEEL|WormBase=WBGene00000461|UniProtKB=Q19503 |
| | | | | family | PTHR11850 |
| | | | NCBI | gene | 191624 |
| | | | RefSeq | protein | NM_077659.4 |
| | | | SwissProt | UniProtAcc | Q19503 |
| | | | TREEFAM | TREEFAM_ID | TF314340 |
| | | | UniProt_GCRP | UniProtAcc | Q19503 |
| | Species | Caenorhabditis elegans |
| | History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace |
| | Status | Live |
| Gene_info | Biotype | SO:0001217 |
| | Gene_class | ceh |
| | Allele (46) |
| | Legacy_information | [Burglin,03/98] homeobox gene |
| | Strain (11) |
| | RNASeq_FPKM (74) |
| | GO_annotation (19) |
| | Ortholog (19) |
| | Paralog | WBGene00000443 | Caenorhabditis elegans | From_analysis | Panther |
| | | | | | WormBase-Compara |
| | | WBGene00006796 | Caenorhabditis elegans | From_analysis | Panther |
| | | | | | WormBase-Compara |
| | | WBGene00017690 | Caenorhabditis elegans | From_analysis | TreeFam |
| | | | | | Panther |
| | | | | | WormBase-Compara |
| | Structured_description | Concise_description | ceh-40 encodes one of three C. elegans homeodomain proteins (CEH-20, CEH-40, and CEH-60) homologous to Extradenticle (Exd/Pbx); ceh-40 genetically interacts with ceh-20 and unc-62 during embryonic development: while loss of ceh-40 activity alone results in no significant embryonic lethality, loss of ceh-40 and ceh-20, or ceh-40, ceh-20, and unc-62, results in incompletely penetrant embryonic lethality. | Paper_evidence | WBPaper00005629 |
| | | | | Curator_confirmed | WBPerson1843 |
| | | | | | WBPerson480 |
| | | | | Date_last_updated | 27 Jun 2011 00:00:00 |
| | | Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in animal organ development; neuron development; and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in dopaminergic neurons. | Paper_evidence | WBPaper00065943 |
| | | | | Curator_confirmed | WBPerson324 |
| | | | | | WBPerson37462 |
| | | | | Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase |
| | | | | Date_last_updated | 29 Nov 2023 00:00:00 |
| Molecular_info | Corresponding_CDS | F17A2.5 |
| | Corresponding_transcript | F17A2.5.1 |
| | Other_sequence | RSC01549_1 |
| | | RS05971 |
| | | CRC11909_1 |
| | Associated_feature | WBsf654475 |
| | | WBsf978385 |
| | | WBsf1007276 |
| | | WBsf1024032 |
| | Transcription_factor | WBTranscriptionFactor000510 |
| Experimental_info | RNAi_result (25) |
| | Expr_pattern (14) |
| | Drives_construct | WBCnstr00002363 |
| | | WBCnstr00002683 |
| | | WBCnstr00037519 |
| | | WBCnstr00042432 |
| | | WBCnstr00042463 |
| | Construct_product | WBCnstr00016535 |
| | | WBCnstr00016723 |
| | | WBCnstr00037519 |
| | Microarray_results (19) |
| | Expression_cluster | WBPaper00024245:gst-5-binding_control |
| | | WBPaper00031040:TGF-beta_adult_downregulated |
| | | WBPaper00032976:non_compensated_genes |
| | | WBPaper00037950:A-class-motor-neurons_embryo_enriched |
| | | WBPaper00037950:BAG-neuron_blastula-embryo_expressed |
| | | WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed |
| | | WBPaper00037950:coelomocytes_L2-larva_expressed |
| | | WBPaper00037950:hypodermis_embryo_enriched |
| | | WBPaper00037950:hypodermis_L3-L4-larva_expressed |
| | | WBPaper00037950:intestine_embryo_enriched |
| | | WBPaper00037950:pharyngeal-muscle_embryo_enriched |
| | | WBPaper00043945:MeHg_upregulated |
| | | WBPaper00044037:eat-2_downregulated |
| | | WBPaper00044316:CH3HgCl_7.5uM_downregulated |
| | | WBPaper00044426:rotenone_24h_upregulated |
| | | WBPaper00044656:tatn-1(qd182)_downregulated |
| | | WBPaper00045521:Oogenic |
| | | WBPaper00045618:puf-8_downregulated |
| | | WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h |
| | | WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h |
| | | WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h |
| | | WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h |
| | | WBPaper00048988:neuron_expressed |
| | | WBPaper00049498:npr-1(ur89)_regulated_3 |
| | | WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult |
| | | WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult |
| | | WBPaper00050488:20C_vs_25C_regulated_N2_adult |
| | | WBPaper00050488:adult_vs_dauer_regulated_N2_20C |
| | | WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C |
| | | WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C |
| | | WBPaper00050712:RC301_vs_DA650_4h-PA_upregulated |
| | | WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult |
| | | WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult |
| | | WBPaper00051039:germline_enriched |
| | | WBPaper00053184:sma-4(rax3)_downregulated |
| | | WBPaper00053302:alovudine_72h_regulated |
| | | WBPaper00053302:stavudine_24h_regulated |
| | | WBPaper00053302:zidovudine_72h_regulated |
| | | WBPaper00053599:female_vs_male_upregulated |
| | | WBPaper00053599:oocyte_vs_mitosis_downregulated |
| | | WBPaper00054493:hpl-2(tm1489)_downregulated |
| | | WBPaper00055013:hmg-3(bar24)_upregulated |
| | | WBPaper00055354:eat-2(ad1116)_downregulated |
| | | WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated |
| | | WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated |
| | | WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated |
| | | WBPaper00055354:Rapamycin-Rifampicin_downregulated |
| | | WBPaper00055354:Rifampicin-Psora_downregulated |
| | | WBPaper00055386:daf-2(e1370)_downregulated |
| | | WBPaper00055482:Tunicamycin_upregulated |
| | | WBPaper00055648:germline_expressed |
| | | WBPaper00055941:atfs-1(et15)_downregulated |
| | | WBPaper00055971:nhl-2(ok818)_20C_upregulated |
| | | WBPaper00055971:nhl-2(ok818)_25C_upregulated |
| | | WBPaper00056034:pals-22(jy3)_downregulated |
| | | WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047) |
| | | WBPaper00056090:E.faecalis_downregulated_N2 |
| | | WBPaper00056161:hermaphrodite_enriched_siRNA |
| | | WBPaper00056167:Cry5B_upregulated |
| | | WBPaper00056617:adr-1_upregulated_L4_transcript |
| | | WBPaper00056826:SGP_biased |
| | | WBPaper00057006:DietaryRestriction_downregulated |
| | | WBPaper00057158:mdt-15(tm2182)_dependent_15C_upregulated |
| | | WBPaper00057288:Cold_downregulated_transcript |
| | | WBPaper00058598:mex-3(eu149)_downregulated |
| | | WBPaper00058948:PA14_upregulated |
| | | WBPaper00059117:B.subtilis_downregulated |
| | | WBPaper00059334:sacy-1(depletion)_regulated |
| | | WBPaper00059664:srbc-48(ac23)_downregulated |
| | | WBPaper00059728:5ug_cholesterol_downregulated |
| | | WBPaper00059728:20ug_cholesterol_downregulated |
| | | WBPaper00060014:set-2(tm1630)_upregulated |
| | | WBPaper00060358:B.thuringiensis_pathogen_regulated_N2 |
| | | WBPaper00060445:ikb-1(nr2027)_downregulated_L1 |
| | | WBPaper00060445:ikb-1(nr2027)_upregulated_L4 |
| | | WBPaper00060445:nfki-1(cer1)_upregulated_L4 |
| | | WBPaper00060683:hlh-11(ko1)_downregulated |
| | | WBPaper00060764:swsn-1(os22ts)_downregulated |
| | | WBPaper00061007:HB101_downregulated |
| | | WBPaper00061007:S.aquatilis_downregulated |
| | | WBPaper00061274:microgravity_upregulated |
| | | WBPaper00061340:Body_wall_muscle |
| | | WBPaper00061424:Diet_MYb120_downregulated |
| | | WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection |
| | | WBPaper00061527:ZK1053.4-C08F1.6 |
| | | WBPaper00061613:human-amyloid-beta_alpha-Synuclein(A53T)_upregulated |
| | | WBPaper00061613:human-amyloid-beta_upregulated |
| | | WBPaper00061653:alh-4(hj221)_downregulated |
| | | WBPaper00062146:MOG-7-degron_2h_regulated |
| | | WBPaper00062156:jmjd-5(zr1234)_updownregulated |
| | | WBPaper00062159:hda-2(ok1479)_downregulated |
| | | WBPaper00062325:muscle_depleted_coding-RNA |
| | | WBPaper00062456:doxycycline_downregulated_CB4856_transcript |
| | | WBPaper00062456:doxycycline_downregulated_N2_transcript |
| | | WBPaper00062585:hlh-26(ok1453)_downregulated_E.faecium |
| | | WBPaper00062587:lsl-1(ljm1)_downregulated |
| | | WBPaper00062587:lsl-1(tm4769)_downregulated |
| | | WBPaper00062672:let-418(n3536)dcp-66(RNAi)_downregulated |
| | | WBPaper00064130:Beta-Amyloid_24h_downregulated_mRNA |
| | | WBPaper00064505:tamoxifen_upregulated |
| | | WBPaper00064716:paraquat_upregulated |
| | | WBPaper00064769:him-17(me24)_downregulated |
| | | WBPaper00065096:25C_vs_20C_upregulated |
| | | WBPaper00065096:Day10_vs_Day1_upregulated |
| | | WBPaper00065096:npr-8(ok1439)_downregulated_Day1_25C |
| | | WBPaper00065096:npr-8(ok1439)_downregulated_Day10_20C |
| | | WBPaper00065096:npr-8(ok1439)_downregulated_Day10_25C |
| | | WBPaper00065975:P-body_vs_oocyte_enriched |
| | | WBPaper00065975:P-body_vs_WholeAnimal_enriched |
| | | WBPaper00065993:glp-1(e2141)_downregulated |
| | | WBPaper00066004:tdp-1(csb38)_downregulated |
| | | WBPaper00066110:Cisplatin_downregulated_diploid |
| | | WBPaper00066110:Doxorubicin_downregulated_diploid |
| | | WBPaper00066110:tetraploid_vs_diploid_downregulated |
| | | WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14 |
| | | cgc4489_group_2 |
| | | WBPaper00025032:cluster_22 |
| | | WBPaper00027111:rrf-2(ok210)_upregulated |
| | | WBPaper00029437:dcr-1_downregulated |
| | | WBPaper00031252:AIN-1_IP_enriched |
| | | WBPaper00035873:dpy-9_regulated |
| | | WBPaper00035873:dpy-10_regulated |
| | | WBPaper00036130:mir-243_down_regulated |
| | | WBPaper00036286:Pattern_D |
| | | WBPaper00037695:LD_3-day |
| | | WBPaper00038427:lin-54_embryo_changed |
| | | WBPaper00040858:eQTL_age_regulated_developing |
| | | WBPaper00040876:mir-35_upregulated |
| | | WBPaper00040963:Q100_down |
| | | WBPaper00040963:Q200_down |
| | | WBPaper00040963:TA300_down |
| | | WBPaper00041606:CE_X.nematophila_regulated |
| | | WBPaper00041906:I-3690_vs_OP50_3d |
| | | WBPaper00041960:N2_fasting_upregulated_anytime |
| | | WBPaper00042258:DA1877_downregulated_GravidAdult |
| | | WBPaper00045263:0.1mM-paraquat_upregulated |
| | | WBPaper00048567:dnj-14_downregulated |
| | | WBPaper00056330:mrps-5(RNAi)_downregulated |
| | | [cgc5767]:cluster_7 |
| | | [cgc5767]:expression_class_E |
| | | [cgc5767]:expression_class_ET |
| | | [cgc5767]:expression_class_ET_max(83_min) |
| | | [cgc5767]:expression_class_E_pi(23_min) |
| | | [cgc5767]:expression_class_M |
| | | [cgc5767]:expression_class_ME |
| | | [cgc5767]:expression_class_MET |
| | | [cgc6390]:herm_sex-enriched |
| | Interaction (286) |
| Map_info | Map | X | Position | 7.02147 | Error | 0.003548 |
| | Positive | Positive_clone | F17A2 | Inferred_automatically | From sequence, transcript, pseudogene data |
| | | | W06D11 |
| | Mapping_data | Multi_point | 4173 |
| | | | 4210 |
| | | | 4765 |
| | Pseudo_map_position |
| Reference (22) |
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission |
| Method | Gene |
