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WormBase Tree Display for Gene: WBGene00000419

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Name Class

WBGene00000419SMapS_parentSequenceCHROMOSOME_IV
IdentityVersion1
NameCGC_nameced-5Person_evidenceWBPerson261
Sequence_nameC02F4.1
Molecular_nameC02F4.1
C02F4.1.1
CE24779
Other_nameCELE_C02F4.1Accession_evidenceNDBBX284604
Public_nameced-5
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:20WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classced
Allele (106)
Legacy_information[C.elegansII] n1812 : programmmed cell deaths abnormal, dying cells arrest at highly refractile stage; killer cells fail to engulf target cells; engulfment group B (ced-2,5,10 : suppress vulvaless phenotype of lin-24, lin-33); Mig, hermaphrodite distal tip cells execute extra turns; extensive maternal rescue; no gross phenotype. OA1: n2002.Cloned : 5.6 kb transcript, predicted protein 180 kD, novel.[Ellis et al. 1991; MT; NF; ZB]
[C.elegansII] n1812 : programmmed cell deaths abnormal, dying cells arrest at highly refractile stage; killer cells fail to engulf target cells; engulfment group B (ced-2,5,10 : suppress vulvaless phenotype of lin-24, lin-33); Mig, hermaphrodite distal tip cells execute extra turns; extensive maternal rescue; no gross phenotype. OA1: n2002.Cloned : 5.6 kb transcript, predicted protein 180 kD, novel. [Ellis et al. 1991; MT; NF; ZB]
[Wu Y-C, Horvitz HR] Encodes 1781 aa predicted protein with similarity to human protein DOCK180. n1812 is stop at codon 28, n2002, n2691 also nonsense mutations, m2098, n2099 are splice acceptor mutations. n1812/sDf2 resemble n1812/n1812, probable null phenotype. Predicted gene C02F4.1
StrainWBStrain00027132
WBStrain00027134
WBStrain00027167
WBStrain00027174
WBStrain00027281
WBStrain00027282
WBStrain00027293
WBStrain00027342
WBStrain00031450
RNASeq_FPKM (74)
GO_annotation (48)
OrthologWBGene00059181Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00030152Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00139642Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00158152Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00127479Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00212097Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00222177Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g10907Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g3492Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g3494Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g4494Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g21728Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g7417Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g5350Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g812Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g950Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g19890Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g14121Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00444.g10924Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00711.g13611Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-ced-5Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g15137Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold629.g9243Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00637.g13869Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_18232Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_015006Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g02933Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g11664Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_40076600Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g11609Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00074085Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00075058Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00241749Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00262118Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00290613Trichuris murisFrom_analysisWormBase-Compara
SGD:S000004414Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
OrthoFinder
OrthoInspector
Panther
FB:FBgn0015513Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
FB:FBgn0264324Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-120703-34Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-031125-1Danio rerioFrom_analysisEnsEMBL-Compara
OrthoFinder
PhylomeDB
ZFIN:ZDB-GENE-080108-4Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-080108-5Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-060130-74Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-100624-1Danio rerioFrom_analysisInparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
HGNC:2987Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:2988Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:2989Homo sapiensFrom_analysisInparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
HGNC:19192Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
HGNC:23476Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:2652871Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:2149010Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:2429763Mus musculusFrom_analysisInparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
MGI:1918006Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
SonicParanoid
MGI:2429765Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1306872Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1566072Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1306677Rattus norvegicusFrom_analysisInparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
RGD:1564189Rattus norvegicusFrom_analysisEnsEMBL-Compara
OrthoFinder
OrthoInspector
PhylomeDB
RGD:1561724Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
SonicParanoid
ParalogWBGene00009065Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00018520Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionced-5 encodes a homolog of the human protein DOCK180; ced-5 is required for the cell engulfment stage of programmed cell death, and physically interacts with CED-2.Paper_evidenceWBPaper00003036
WBPaper00003948
WBPaper00005004
WBPaper00012851
WBPaper00013593
WBPaper00013632
WBPaper00038460
Curator_confirmedWBPerson1843
WBPerson567
Date_last_updated29 Jun 2012 00:00:00
Automated_descriptionEnables SH3 domain binding activity and enzyme binding activity. Involved in several processes, including left/right axis specification; positive regulation of distal tip cell migration; and vesicle-mediated transport. Located in presynapse. Part of guanyl-nucleotide exchange factor complex. Expressed in body wall muscle cell; hermaphrodite somatic gonadal cell; and intestinal cell. Human ortholog(s) of this gene implicated in attention deficit hyperactivity disorder and immunodeficiency 40. Is an ortholog of human DOCK2 (dedicator of cytokinesis 2) and DOCK5 (dedicator of cytokinesis 5).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0111951Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:2988)
DOID:1094Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:2989)
Molecular_infoCorresponding_CDSC02F4.1
Corresponding_transcriptC02F4.1.1
Other_sequence (13)
Associated_featureWBsf646307
WBsf660584
WBsf976954
WBsf976955
WBsf976956
WBsf228996
WBsf228997
WBsf228998
Experimental_infoRNAi_result (11)
Expr_patternExpr8762
Expr14253
Expr1020545
Expr1030235
Expr1143552
Expr2009849
Expr2028089
Drives_constructWBCnstr00005770
WBCnstr00037557
WBCnstr00040684
Construct_productWBCnstr00014899
WBCnstr00037557
Microarray_results (24)
Expression_cluster (132)
Interaction (129)
WBProcessWBbiopr:00000013
WBbiopr:00000014
WBbiopr:00000015
WBbiopr:00000023
WBbiopr:00000107
Map_infoMapIVPosition4.61067Error0.002681
Well_ordered
PositivePositive_cloneC02F4Inferred_automaticallyFrom sequence, transcript, pseudogene data
ZK188
Mapping_dataMulti_point1517
1518
1520
1521
1522
1523
1820
1822
4720
Pos_neg_data4243
Reference (191)
MethodGene