WormBase Tree Display for Gene: WBGene00000414
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| WBGene00000414 | SMap | S_parent | Sequence | ZK1236 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | cec-1 | Person_evidence | WBPerson437 | |||||
| Sequence_name | ZK1236.2 | ||||||||
| Molecular_name | ZK1236.2 | ||||||||
| ZK1236.2.1 | |||||||||
| CE00380 | |||||||||
| Other_name | CELE_ZK1236.2 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | cec-1 | ||||||||
| DB_info | Database | AceView | gene | 3J517 | |||||
| WormQTL | gene | WBGene00000414 | |||||||
| WormFlux | gene | WBGene00000414 | |||||||
| NDB | locus_tag | CELE_ZK1236.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000414|UniProtKB=P34618 | |||||||
| family | PTHR22812 | ||||||||
| NCBI | gene | 176190 | |||||||
| RefSeq | protein | NM_066461.6 | |||||||
| SwissProt | UniProtAcc | P34618 | |||||||
| UniProt_GCRP | UniProtAcc | P34618 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cec | ||||||||
| Allele (21) | |||||||||
| Legacy_information | [Muller F] cec for C. elegans chromobox, no mutants known. Encodes 304 aa protein with chromodomain, nuclear protein present in all somaticc cells from 50-80 cell stage onward. Predicted gene ZK1236.2. | ||||||||
| Strain | WBStrain00031762 | ||||||||
| WBStrain00034731 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Ortholog (22) | |||||||||
| Paralog | WBGene00001995 | Caenorhabditis elegans | From_analysis | Panther | |||||
| Structured_description | Concise_description | cec-1 encodes a nuclear protein with a chromodomain that is ubiquitously expressed in somatic cells, but is dispensable for embryonic survival or gross adult morphology. | Paper_evidence | WBPaper00002566 | |||||
| WBPaper00012893 | |||||||||
| WBPaper00013007 | |||||||||
| WBPaper00013137 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable chromatin binding activity and methylated histone binding activity. Predicted to be involved in chromatin organization and negative regulation of transcription by RNA polymerase II. Predicted to be located in chromosome and nucleus. Predicted to be part of pericentric heterochromatin. Expressed in several structures, including germ line; oocyte; and somatic cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZK1236.2 | |||||||
| Corresponding_transcript | ZK1236.2.1 | ||||||||
| Other_sequence (27) | |||||||||
| Associated_feature | WBsf993336 | ||||||||
| WBsf993337 | |||||||||
| WBsf1015421 | |||||||||
| WBsf225413 | |||||||||
| WBsf225414 | |||||||||
| WBsf225415 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00113465 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00038177 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00021834 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00059164 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00005191 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1599 | ||||||||
| Expr1600 | |||||||||
| Expr13918 | |||||||||
| Expr13920 | |||||||||
| Expr1020453 | |||||||||
| Expr1030230 | |||||||||
| Expr1162584 | |||||||||
| Expr1200184 | |||||||||
| Expr2009832 | |||||||||
| Expr2028072 | |||||||||
| Drives_construct | WBCnstr00037560 | ||||||||
| Construct_product | WBCnstr00037560 | ||||||||
| Antibody | WBAntibody00000123 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (127) | |||||||||
| Interaction (18) | |||||||||
| Map_info | Map | III | Position | -0.26203 | Error | 0.000311 | |||
| Positive | Positive_clone | ZK1236 | Person_evidence | WBPerson437 | |||||
| Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
| Mapping_data | Multi_point | 5521 | |||||||
| 4740 | |||||||||
| 4969 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (12) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
