Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00000120

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00000120SMapS_parentSequenceC01F6
IdentityVersion2
NameCGC_namealy-1Person_evidenceWBPerson297
WBPerson4981
Sequence_nameC01F6.5
Molecular_nameC01F6.5
C01F6.5.1
CE02954
Other_nameref-1Paper_evidenceWBPaper00013477
CELE_C01F6.5Accession_evidenceNDBBX284604
Public_namealy-1
DB_infoDatabaseAceViewgene4J873
WormQTLgeneWBGene00000120
WormFluxgeneWBGene00000120
NDBlocus_tagCELE_C01F6.5
PanthergeneCAEEL|WormBase=WBGene00000120|UniProtKB=Q17561
familyPTHR19965
NCBIgene177735
RefSeqproteinNM_069187.8
TREEFAMTREEFAM_IDTF313312
TrEMBLUniProtAccQ17561
UniProt_GCRPUniProtAccQ17561
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:20WBPerson1971EventImportedInitial conversion from geneace
227 Apr 2005 13:40:18WBPerson2970Name_changeOther_nameref-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classaly
Allele (20)
StrainWBStrain00032271
WBStrain00037646
RNASeq_FPKM (74)
GO_annotation00058513
00058514
00058515
00058516
00106834
OrthologWBGene00040468Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00040469Caenorhabditis briggsaeFrom_analysisOMA
WBGene00145501Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00073663Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00063902Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00082926Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00080277Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00080514Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00090238Pristionchus pacificusFrom_analysisOMA
WormBase-Compara
WBGene00215151Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00212761Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00207160Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00271408Caenorhabditis briggsaeFrom_analysisWormBase-Compara
CSP26.g2Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP39.g975Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g12743Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cnig_chr_IV.g13027Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_IV.g13028Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g10846Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00790.g15489Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_00790.g15494Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_01845.g23481Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_16551Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_21088Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_013279Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_013336Caenorhabditis remaneiFrom_analysisWormBase-Compara
Sp34_40176300Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_40178000Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_40178500Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_40276700Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_40276800Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_40276900Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_40320600Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_40320700Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_40320900Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_40321100Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_40321200Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_40321400Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_40321600Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_40331100Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_40331200Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_40331300Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_40331400Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_40331500Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_40333800Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_40352600Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g11239Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00111598Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00116154Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00275161Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00285690Trichuris murisFrom_analysisWormBase-Compara
WBGene00298093Trichuris murisFrom_analysisWormBase-Compara
SGD:S000002789Saccharomyces cerevisiaeFrom_analysisInparanoid
OMA
OrthoFinder
OrthoInspector
PhylomeDB
FB:FBgn0032439Drosophila melanogasterFrom_analysisOrthoFinder
Panther
SonicParanoid
FB:FBgn0010774Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-070928-29Danio rerioFrom_analysisHieranoid
Inparanoid
OrthoFinder
Panther
HGNC:19071Homo sapiensFrom_analysisHieranoid
Inparanoid
OrthoFinder
Panther
MGI:1913144Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
RGD:1594679Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OrthoFinder
Panther
ParalogWBGene00000121Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00000122Caenorhabditis elegansFrom_analysisInparanoid_8
Panther
WormBase-Compara
WBGene00015329Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionConcise_descriptionaly-1 encodes an RRM motif-containing protein required for normal export of TRA-1/tra-2 mRNA complexes, and thus for normal hermaphroditism; ALY-1 is orthologous to human THOC4 (OMIM:604171), and paralogous to ALY-2 and ALY-3; in the absence of TRA-1, and in conjunction with NXF-2, ALY-1 and its paralog ALY-2 are required to bind the TRE 3' UTR element of tra-2 mRNA, and block tra-2 mRNA's export from the nucleus; ALY-1 and NXF-2 bind the TRE element in vitro; ALY-1 is also bound competitively by either NXF-2 or TRA-1 in vitro; aly-1(RNAi) animals have abnormal female (as opposed to hermaphrodite) sexual phenotypes; by orthology, ALY-1 is thought to promote recruitment of mRNA export factor to mRNAs.Paper_evidenceWBPaper00013477
WBPaper00030790
Curator_confirmedWBPerson1843
WBPerson567
Date_last_updated24 Jul 2012 00:00:00
Automated_descriptionPredicted to enable mRNA binding activity. Predicted to be involved in mRNA export from nucleus. Predicted to be located in nucleus. Is an ortholog of human ALYREF (Aly/REF export factor).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC01F6.5
Corresponding_transcriptC01F6.5.1
Other_sequenceCBC17281_1
Associated_featureWBsf646214
WBsf655036
WBsf997356
WBsf997357
WBsf1017926
WBsf1017927
WBsf228787
Experimental_infoRNAi_result (15)
Expr_patternExpr13878
Expr1022895
Expr1030066
Expr1143427
Expr2009316
Expr2027552
Drives_constructWBCnstr00017948
Construct_productWBCnstr00016846
WBCnstr00017948
WBCnstr00040226
Microarray_results (20)
Expression_cluster (173)
Interaction (221)
Map_infoMapIVPosition4.05043Error0.00037
PositivePositive_cloneC01F6Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
Reference (25)
RemarkPublished as ref-1. The CGC approved ref-1 is a different sequence with ID WBGene00004334Paper_evidenceWBPaper00013477
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene