WormBase Tree Display for Gene: WBGene00000019
expand all nodes | collapse all nodes | view schema
| WBGene00000019 | Evidence | Person_evidence | WBPerson583 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| WBPerson36 | |||||||||
| SMap | S_parent | Sequence | CHROMOSOME_IV | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | abt-1 | Person_evidence | WBPerson36 | |||||
| Sequence_name | C24F3.5 | ||||||||
| Molecular_name | C24F3.5a | ||||||||
| C24F3.5a.1 | |||||||||
| CE48446 | |||||||||
| C24F3.5b | |||||||||
| CE40439 | |||||||||
| C24F3.5b.1 | |||||||||
| Other_name | CELE_C24F3.5 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | abt-1 | ||||||||
| DB_info | Database | AceView | gene | 4K970 | |||||
| WormQTL | gene | WBGene00000019 | |||||||
| WormFlux | gene | WBGene00000019 | |||||||
| NDB | locus_tag | CELE_C24F3.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000019|UniProtKB=S6EZS3 | |||||||
| family | PTHR19229 | ||||||||
| NCBI | gene | 182849 | |||||||
| RefSeq | protein | NM_001306925.2 | |||||||
| NM_001306926.3 | |||||||||
| TrEMBL | UniProtAcc | S6EZS3 | |||||||
| S6FN28 | |||||||||
| UniProt_GCRP | UniProtAcc | S6EZS3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:19 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | abt | ||||||||
| Allele (100) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00104916 | ||||||||
| 00104917 | |||||||||
| 00104918 | |||||||||
| 00104919 | |||||||||
| 00104920 | |||||||||
| 00104921 | |||||||||
| 00104922 | |||||||||
| 00106548 | |||||||||
| 00106549 | |||||||||
| Contained_in_operon | CEOP4364 | ||||||||
| Ortholog (35) | |||||||||
| Paralog | WBGene00000421 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00000022 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00000020 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00000023 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | abt-1 encodes a predicted ATP-binding cassette (ABC) transporter that is a member of the ABCA subfamily of transport proteins; ABT-1 is predicted to function as a transmembrane protein that couples energy to transport of various molecules across membranes; abt-1 is required for efficient RNA interference in the germline. | Paper_evidence | WBPaper00006421 | |||||
| WBPaper00027644 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 14 Jul 2014 00:00:00 | ||||||||
| Automated_description | Predicted to enable ATPase-coupled transmembrane transporter activity and lipid transporter activity. Involved in regulatory ncRNA-mediated post-transcriptional gene silencing. Predicted to be located in intracellular membrane-bounded organelle. Is an ortholog of human ABCA5 (ATP binding cassette subfamily A member 5). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C24F3.5a | |||||||
| C24F3.5b | |||||||||
| Corresponding_CDS_history | C24F3.5:wp165 | ||||||||
| C24F3.5:wp209 | |||||||||
| C24F3.5:wp238 | |||||||||
| Corresponding_transcript | C24F3.5a.1 | ||||||||
| C24F3.5b.1 | |||||||||
| Other_sequence | CJC18186_1 | ||||||||
| Associated_feature | WBsf997576 | ||||||||
| WBsf1018061 | |||||||||
| WBsf230694 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00018796 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00011114 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041095 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr3321 | ||||||||
| Expr1010727 | |||||||||
| Expr1145132 | |||||||||
| Expr2009094 | |||||||||
| Expr2027330 | |||||||||
| Drives_construct | WBCnstr00011317 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (149) | |||||||||
| Interaction (38) | |||||||||
| Map_info | Map | IV | Position | 4.55987 | Error | 6.9e-05 | |||
| Positive | Positive_clone | C24F3 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00006421 | ||||||||
| WBPaper00027644 | |||||||||
| WBPaper00031484 | |||||||||
| WBPaper00062625 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
