WormBase Tree Display for Gene: WBGene00000010
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| WBGene00000010 | Evidence | Author_evidence | Veljkovic E | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Verrey F | |||||||||
| SMap | S_parent | Sequence | Y53H1C | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | aat-9 | |||||||
| Sequence_name | Y53H1C.1 | ||||||||
| Molecular_name | Y53H1C.1a | ||||||||
| Y53H1C.1a.1 | |||||||||
| CE22438 | |||||||||
| Y53H1C.1b | |||||||||
| CE38453 | |||||||||
| Y53H1C.1b.1 | |||||||||
| Other_name | CELE_Y53H1C.1 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | aat-9 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00000010 | |||||
| WormFlux | gene | WBGene00000010 | |||||||
| NDB | locus_tag | CELE_Y53H1C.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000010|UniProtKB=Q9NA91 | |||||||
| family | PTHR11785 | ||||||||
| NCBI | gene | 190250 | |||||||
| RefSeq | protein | NM_001026617.5 | |||||||
| NM_001026618.5 | |||||||||
| TrEMBL | UniProtAcc | Q56VY0 | |||||||
| Q9NA91 | |||||||||
| UniProt_GCRP | UniProtAcc | Q9NA91 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:19 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | aat | ||||||||
| Allele (151) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00081168 | ||||||||
| 00081169 | |||||||||
| 00081170 | |||||||||
| 00081171 | |||||||||
| 00081172 | |||||||||
| 00081173 | |||||||||
| 00106538 | |||||||||
| 00106539 | |||||||||
| 00106540 | |||||||||
| Contained_in_operon | CEOP1950 | ||||||||
| Ortholog (32) | |||||||||
| Paralog (12) | |||||||||
| Structured_description | Concise_description | aat-9 encodes an amino acid transporter catalytic subunit; AAT-9 lacks the conserved cysteine residue proposed to be essential for association with a glycoprotein subunit, and when expressed alone in Xenopus ooctyes, AAT-9 can localize to the cell surface and function as an aromatic amino acid exchanger that displays substrate-activated anion conductance; nevertheless, AAT-9 activity is enhanced by co-expression with the ATG-1 and ATG-2 glycoprotein subunits; an aat-9::gfp promoter fusion directs expression in anterior neurons, including some chemosensory neurons, as well as in some anterior body wall muscles. | Paper_evidence | WBPaper00006408 | |||||
| WBPaper00024381 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 03 Mar 2006 00:00:00 | ||||||||
| Automated_description | Predicted to enable L-amino acid transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport. Located in cell surface. Expressed in body wall musculature and neurons. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y53H1C.1a | |||||||
| Y53H1C.1b | |||||||||
| Corresponding_transcript | Y53H1C.1a.1 | ||||||||
| Y53H1C.1b.1 | |||||||||
| Associated_feature | WBsf976578 | ||||||||
| WBsf976579 | |||||||||
| WBsf220332 | |||||||||
| WBsf220333 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00116961 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00004721 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00037450 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00004720 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr3122 | ||||||||
| Expr1016320 | |||||||||
| Expr1030005 | |||||||||
| Expr1160770 | |||||||||
| Expr2009072 | |||||||||
| Expr2027308 | |||||||||
| Drives_construct | WBCnstr00011152 | ||||||||
| Antibody | WBAntibody00000794 | ||||||||
| Microarray_results (26) | |||||||||
| Expression_cluster (85) | |||||||||
| Interaction | WBInteraction000140033 | ||||||||
| WBInteraction000279960 | |||||||||
| WBInteraction000322665 | |||||||||
| WBInteraction000463823 | |||||||||
| WBInteraction000579834 | |||||||||
| Map_info | Map | I | Position | 7.96457 | Error | 0.003257 | |||
| Positive | Positive_clone | Y53H1C | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00006408 | ||||||||
| WBPaper00024381 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
