WormBase Tree Display for Sequence: T26F2

T26F2 DNA: T26F2 16036
  SMap: S_child: Gene_child: WBGene00012058 14374 12971
        WBGene00077571 3443 2207
        WBGene00045401 12310 10865
        WBGene00012057 5966 7953
        WBGene00050902 3653 5013
      CDS_child (59)
      Transcript: T26F2.1a.1 5966 7953
        T26F2.1b.1 5966 7953
        T26F2.3.1 12140 10865
        T26F2.3.2 12310 10865
      Pseudogene: T26F2.2 14374 12971
        T26F2.4 3653 5013
        T26F2.5 3443 2207
      PCR_product (12)
      Allele: WBVar02125266 11463 11789
        WBVar01064636 3330 3330
        WBVar01064637 3523 3523
        WBVar01064638 3684 3684
        WBVar01064639 3697 3697
        WBVar01064640 3709 3709
        WBVar01064641 3824 3824
        WBVar01064642 7973 7973
        WBVar01064643 8045 8045
        WBVar01064644 8076 8076
        WBVar01064645 8550 8550
        WBVar01064646 8593 8593
        WBVar01064647 9001 9001
        WBVar01064648 9164 9164
        WBVar01064649 9246 9246
        WBVar01064650 9447 9447
        WBVar01064651 9767 9767
        WBVar01064652 9862 9862
        WBVar01064653 9862 9862
        WBVar01064654 9929 9929
        WBVar01590416 8565 8565
        WBVar01064655 10167 10167
        WBVar01064656 10255 10255
        WBVar01590417 12730 12730
        WBVar01590418 13439 13439
        WBVar01064657 10258 10258
        WBVar01064658 10312 10312
        WBVar00309268 13055 13055
        WBVar01064659 10695 10695
        WBVar01064660 10850 10850
        WBVar00313409 3373 3373
        WBVar01064661 10867 10867
        WBVar00313410 3380 3380
        WBVar01064662 11033 11033
        WBVar01064663 11151 11151
        WBVar01064664 11154 11154
        WBVar01064665 11340 11340
        WBVar01064666 11394 11394
        WBVar01064667 11441 11441
        WBVar01064668 11570 11570
        WBVar01871335 3468 3468
        WBVar01064669 11843 11843
        WBVar01064670 11911 11911
        WBVar01871336 3835 3835
        WBVar01064671 12005 12005
        WBVar01871337 8540 8540
        WBVar01064672 12064 12064
        WBVar01871338 10142 10142
        WBVar01064673 12165 12165
        WBVar01871339 11687 11687
        WBVar01871340 12204 12204
        WBVar01064674 12167 12167
        WBVar01064675 12477 12477
        WBVar01871341 13557 13557
        WBVar01871342 13727 13727
        WBVar01064676 12680 12680
        WBVar01064677 12724 12724
        WBVar01871343 14760 14760
        WBVar01871344 15226 15226
        WBVar01064678 12756 12756
        WBVar01064679 13015 13015
        WBVar01871345 15790 15790
        WBVar01064680 13342 13342
        WBVar01064681 13356 13356
        WBVar01064682 13358 13358
        WBVar01064683 13726 13726
        WBVar01064684 14010 14010
        WBVar01064685 14347 14347
        WBVar01064686 14391 14391
        WBVar01064687 14531 14531
        WBVar01064688 14697 14697
        WBVar01064689 15071 15071
        WBVar01064690 15203 15203
        WBVar01064691 15208 15208
        WBVar01064692 15332 15332
        WBVar01064693 15503 15503
        WBVar01064694 15520 15520
        WBVar00246470 9773 9773
        WBVar01064695 15711 15711
        WBVar00246471 9919 9923
        WBVar01064696 15917 15917
        WBVar00476021 10529 10529
        WBVar00476022 13051 13051
        WBVar00476023 13748 13748
        WBVar00476024 14347 14347
        WBVar00476025 14509 14509
        WBVar02062148 14932 14933
        WBVar02024560 14728 14728
        WBVar00320849 13112 13112
        WBVar00014570 8960 8960
        WBVar00272650 7591 7592
        WBVar00014575 9425 9425
        WBVar02125174 11537 12204
        WBVar00014580 9529 9529
        WBVar00014585 10345 10345
        WBVar01744240 3374 3374
        WBVar01744241 3498 3498
        WBVar00014590 11164 11164
        WBVar01744242 3578 3578
        WBVar01744243 3849 3849
        WBVar00014595 11165 11165
        WBVar01744244 9593 9593
        WBVar01744245 9633 9633
        WBVar01744246 9759 9759
        WBVar01744247 13981 13981
        WBVar00014600 11913 11913
        WBVar01744248 15680 15680
        WBVar00014605 12037 12037
        WBVar00014610 12219 12219
        WBVar00014615 12585 12585
        WBVar02137502 9420 9420
        WBVar00014620 12656 12656
        WBVar00590753 10504 10504
        WBVar00014625 12727 12727
        WBVar00590754 10539 10539
        WBVar01842669 10987 10987
        WBVar01842670 15055 15055
        WBVar00590755 10573 10573
        WBVar00014630 13416 13416
        WBVar00590756 11574 11574
        WBVar00590758 11933 11933
        WBVar00590763 13491 13491
        WBVar00590765 14153 14153
        WBVar00014635 13815 13815
        WBVar00590766 14362 14362
        WBVar02118520 14737 14775
        WBVar00590768 14685 14685
        WBVar00014640 13836 13836
        WBVar00014645 14636 14636
        WBVar01462745 10621 10621
        WBVar00014650 14696 14696
        WBVar01462747 15646 15646
        WBVar01462748 15740 15740
        WBVar00014655 14805 14805
        WBVar01975354 9913 9917
        WBVar00255006 1510 1511
        WBVar01975355 13849 13850
        WBVar00014660 15387 15387
        WBVar01975356 14775 14775
        WBVar00014665 15442 15442
        WBVar00014670 15608 15608
        WBVar01497283 11490 11700
        WBVar00319002 13112 13112
        WBVar00305785 14889 14889
        WBVar00305786 14890 14890
        WBVar02146334 11071 11071
      Oligo_set: Aff_T26F2.2 11668 10974
      Feature_object (34)
      Feature_data: T26F2:TranscriptionallyActiveRegion 1 16036
        T26F2:ChIPSeqTF 1 16036
        T26F2:Dust 1 16036
        T26F2:inverted 1 16036
      Homol_data (14)
  Structure: From: Source: CHROMOSOME_V
    Overlap_right: F58E10 15933
    Overlap_left: R10D12
    Clone_left_end: T26F2 1
      F58E10 15933
    Clone_right_end: R10D12 7113
  DB_info: Database: EMBL NDB_AC Z82054
        NDB_SV Z82054.1
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: Percy CM
    From_laboratory: HX
    Date_directory: 970403
    Species: Caenorhabditis elegans
    Strain: WBStrain00000001
  Visible: Clone: T26F2
  Properties: Genomic_canonical
    Checksum: MD5: f99565842372c98e2aede7a3e28190fd
    Status: Finished: 03 Apr 1997 00:00:00
      Submitted: 06 Nov 1996 00:00:00
      Annotated: 18 Jul 1997 00:00:00
  Map: Sequence-V Ends: Left: 7930
        Right: 7941
  Interpolated_map_position: V 5.86768
  Assembly_tags: Clone left end 1 4 T26F2
      15933 15936 F58E10
      16036 15933
    Finished Left 1 4 T26F2
    annotation 3442 3780 Loop of large inverted repeat orientation of loop is unknown
      8287 8228 Single clone across repetitive region edited according to repeat.Seemsto be no base pair difference in this region between the 2 arms of this inverted repeat. Restriction digest agrees with data
      14699 14805 Region covered by single clonewith 2 different chemistriesThis region is immediately to the leftof a small inverted repeat making confirmation of this sequence difficultRestriction digest of EcoRI gives apredicted band size of 5015 vs 4987from data.
    Clone right end 7108 7113 R10D12
      7113 7108
    Finished Right 16036 16033 T26F2
  Method: Genomic_canonical