WormBase Tree Display for CDS: R03D7.1
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| R03D7.1 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | R03D7 | |||
| Structure | Source_exons | 1 | 126 | |||
| 267 | 513 | |||||
| 566 | 658 | |||||
| 800 | 1165 | |||||
| 1215 | 2460 | |||||
| 2506 | 3142 | |||||
| 3195 | 3479 | |||||
| 3523 | 4185 | |||||
| 4234 | 4320 | |||||
| DB_info | Database | KEGG | KEGG_id | 2.1.1.13 | ||
| SwissProt | UniProtAcc | Q09582 | ||||
| UniProt | UniProtAcc | Q09582 | ||||
| UniProt_GCRP | UniProtAcc | Q09582 | ||||
| AlphaFold | entry | Q09582 | ||||
| NCBI_protein | GI_number | GI:3878791 | ||||
| TREEFAM | TREEFAM_ID | TF312829 | ||||
| Protein_id | CHROMOSOME_II | CAA86855 | 1 | |||
| DB_remark | METR-1 protein; contains similarity to Pfam domains PF00809 (Pterin binding enzyme), PF02310 (B12 binding domain), PF02574 (Homocysteine S-methyltransferase), PF02607 (B12 binding domain), PF02965 (Vitamin B12 dependent methionine synthase, activation domain); contains similarity to Interpro domains IPR004223 (Vitamin B12-dependent methionine synthase, activation domain), IPR037010 (Vitamin B12-dependent methionine synthase, activation domain superfamily), IPR003759 (Cobalamin (vitamin B12)-binding module, cap domain), IPR036594 (Methionine synthase domain), IPR011822 (Cobalamin-dependent methionine synthase), IPR036724 (Cobalamin-binding domain superfamily), IPR036589 (Homocysteine-binding domain superfamily), IPR003726 (Homocysteine-binding domain), IPR011005 (Dihydropteroate synthase-like superfamily), IPR006158 (Cobalamin (vitamin B12)-binding domain), IPR000489 (Pterin-binding domain) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00010988 | ||||
| Corresponding_transcript | R03D7.1.1 | |||||
| Corresponding_protein | CE01609 | |||||
| Corresponding_PCR_product | cenix:20-g6 | |||||
| mv_R03D7.1 | ||||||
| sjj_R03D7.1 | ||||||
| Corresponding_oligo_set (14) | ||||||
| Matching_cDNA (133) | ||||||
| RNAi_result | WBRNAi00071221 | |||||
| WBRNAi00034551 | ||||||
| WBRNAi00090587 | ||||||
| WBRNAi00051170 | ||||||
| WBRNAi00106971 | ||||||
| WBRNAi00017346 | ||||||
| Microarray_results (15) | ||||||
| Brief_identification | Probable methionine synthase | Accession_evidence | UniProt | SP:Q09582 | ||
| RNASeq_FPKM (74) | ||||||
| Associated_feature | WBsf003893 | |||||
| Method | curated |
