WormBase Tree Display for CDS: PPA01382
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| PPA01382 | SMap | S_parent | Sequence | PPA_ChrV | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (24) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S60-31.17 | ||
| DB_remark | PPA-UNC-37.2 protein; contains similarity to Pfam domains PF00400 (WD domain, G-beta repeat), PF03920 (Groucho/TLE N-terminal Q-rich domain); contains similarity to Interpro domains IPR001680 (WD40 repeat), IPR005617 (Groucho/TLE, N-terminal Q-rich domain), IPR036322 (WD40-repeat-containing domain superfamily), IPR009146 (Groucho/transducin-like enhancer), IPR015943 (WD40/YVTN repeat-like-containing domain superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00195123 | ||||
| Corresponding_transcript | PPA01382.1 | |||||
| Corresponding_protein | PP58648 | |||||
| Corresponding_oligo_set | GPL14372_Probes_81402 | |||||
| GPL14372_Probes_81403 | ||||||
| Microarray_results | GPL14372_Probes_81402 | |||||
| GPL14372_Probes_81403 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S60-31.17 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
