WormBase Tree Display for CDS: PPA01382
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PPA01382 | SMap | S_parent | Sequence | PPA_ChrV | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 21 | |||
465 | 566 | |||||
903 | 967 | |||||
1440 | 1502 | |||||
2354 | 2441 | |||||
2732 | 2833 | |||||
3267 | 3417 | |||||
3806 | 3879 | |||||
4313 | 4354 | |||||
4550 | 4628 | |||||
5540 | 5628 | |||||
5881 | 5953 | |||||
6588 | 6682 | |||||
7053 | 7121 | |||||
7324 | 7403 | |||||
7599 | 7624 | |||||
7861 | 8000 | |||||
8473 | 8541 | |||||
9404 | 9488 | |||||
9985 | 10082 | |||||
10329 | 10397 | |||||
10730 | 10843 | |||||
11227 | 11373 | |||||
11608 | 11631 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S60-31.17 | ||
DB_remark | PPA-UNC-37.2 protein; contains similarity to Pfam domains PF00400 (WD domain, G-beta repeat), PF03920 (Groucho/TLE N-terminal Q-rich domain); contains similarity to Interpro domains IPR001680 (WD40 repeat), IPR005617 (Groucho/TLE, N-terminal Q-rich domain), IPR036322 (WD40-repeat-containing domain superfamily), IPR009146 (Groucho/transducin-like enhancer), IPR015943 (WD40/YVTN repeat-like-containing domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00195123 | ||||
Corresponding_transcript | PPA01382.1 | |||||
Corresponding_protein | PP58648 | |||||
Corresponding_oligo_set | GPL14372_Probes_81402 | |||||
GPL14372_Probes_81403 | ||||||
Microarray_results | GPL14372_Probes_81402 | |||||
GPL14372_Probes_81403 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S60-31.17 | Curator_confirmed | WBPerson4055 | |||
Method | curated |