WormBase Tree Display for CDS: M04G12.1i
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| M04G12.1i | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | M04G12 | |||
| Structure | Source_exons | 1 | 15 | |||
| 65 | 281 | |||||
| 637 | 1058 | |||||
| 1154 | 1234 | |||||
| 1370 | 1453 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | A0A486WTX8 | ||
| UniProt | UniProtAcc | A0A486WTX8 | ||||
| AlphaFold | entry | A0A486WTX8 | ||||
| NCBI_protein | GI_number | GI:1615792108 | ||||
| Protein_id | CHROMOSOME_V | VGM69578 | 1 | |||
| DB_remark | IFBP-1 protein; contains similarity to Interpro domain IPR044882 (Interferon regulatory factor 2-binding protein 1/2, C3HC4-type RING finger superfamily) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Curator_confirmed | WBPerson4025 | ||||
| Feature_evidence | WBsf189527 | |||||
| Visible | Gene | WBGene00010867 | ||||
| Corresponding_transcript | M04G12.1i.1 | |||||
| Corresponding_protein | CE53124 | |||||
| Corresponding_PCR_product | cenix:39-f3 | |||||
| mv_M04G12.1a | ||||||
| mv_M04G12.1b | ||||||
| sjj_M04G12.1 | ||||||
| Corresponding_oligo_set (16) | ||||||
| Matching_cDNA | male_Nanopore_Roach_128611 | |||||
| young_adult_Nanopore_Roach_140604 | ||||||
| L2_Nanopore_Roach_111090 | ||||||
| adult_Nanopore_Roach_88621 | ||||||
| L3_Nanopore_Roach_6572 | ||||||
| adult_Nanopore_Roach_40548 | ||||||
| adult_Nanopore_Roach_6517 | ||||||
| RNAi_result | WBRNAi00050916 | |||||
| WBRNAi00034431 | ||||||
| WBRNAi00017183 | ||||||
| WBRNAi00073227 | ||||||
| WBRNAi00076576 | ||||||
| Microarray_results (17) | ||||||
| Brief_identification | RING-type domain-containing protein | Accession_evidence | UniProt | TR:A0A486WTX8 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 13 Feb 2019 14:28:28 | WBPerson4025 | ||||
| Remark | [190213 gw3] This structure has been created based on the RNASeq data. | Curator_confirmed | WBPerson4025 | |||
| From_analysis | RNASeq | |||||
| Method | curated |
