WormBase Tree Display for Gene: WBGene00010867
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| WBGene00010867 | SMap | S_parent | Sequence | M04G12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | ifbp-1 | |||||||
| Sequence_name | M04G12.1 | ||||||||
| Molecular_name (30) | |||||||||
| Other_name | tag-260 | ||||||||
| CELE_M04G12.1 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | ifbp-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 22 Apr 2005 11:55:18 | WBPerson2970 | Name_change | CGC_name | tag-260 | ||||
| 3 | 10 Sep 2020 13:47:56 | WBPerson1983 | Name_change | CGC_name | ifbp-1 | ||||
| Other_name | tag-260 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ifbp | ||||||||
| Allele (166) | |||||||||
| Strain | WBStrain00031982 | ||||||||
| WBStrain00036086 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00003496 | ||||||||
| 00003497 | |||||||||
| 00051747 | |||||||||
| 00051748 | |||||||||
| 00051749 | |||||||||
| 00051750 | |||||||||
| 00051751 | |||||||||
| 00051752 | |||||||||
| 00051753 | |||||||||
| 00051754 | |||||||||
| Ortholog (43) | |||||||||
| Paralog | WBGene00009939 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Automated_description | Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in common variable immunodeficiency 14 and neurodevelopmental disorder with regression, abnormal movements, loss of speech, and seizures. Is an ortholog of human IRF2BP2 (interferon regulatory factor 2 binding protein 2) and IRF2BPL (interferon regulatory factor 2 binding protein like). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0081327 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14282) | ||||
| DOID:0081156 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:21729) | ||||||
| Molecular_info | Corresponding_CDS | M04G12.1a | |||||||
| M04G12.1b | |||||||||
| M04G12.1c | |||||||||
| M04G12.1d | |||||||||
| M04G12.1e | |||||||||
| M04G12.1f | |||||||||
| M04G12.1g | |||||||||
| M04G12.1h | |||||||||
| M04G12.1i | |||||||||
| M04G12.1j | |||||||||
| Corresponding_CDS_history | M04G12.1a:wp90 | ||||||||
| Corresponding_transcript | M04G12.1a.1 | ||||||||
| M04G12.1b.1 | |||||||||
| M04G12.1c.1 | |||||||||
| M04G12.1d.1 | |||||||||
| M04G12.1e.1 | |||||||||
| M04G12.1f.1 | |||||||||
| M04G12.1g.1 | |||||||||
| M04G12.1h.1 | |||||||||
| M04G12.1i.1 | |||||||||
| M04G12.1j.1 | |||||||||
| Other_sequence (51) | |||||||||
| Associated_feature (25) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00050916 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00034431 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00046174 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00017183 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00073227 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076576 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1018818 | ||||||||
| Expr1034761 | |||||||||
| Expr1154614 | |||||||||
| Expr2017250 | |||||||||
| Expr2035386 | |||||||||
| Drives_construct | WBCnstr00031098 | ||||||||
| Construct_product | WBCnstr00031098 | ||||||||
| Microarray_results (36) | |||||||||
| Expression_cluster (151) | |||||||||
| Interaction (148) | |||||||||
| Map_info | Map | V | Position | 5.20783 | Error | 0.004132 | |||
| Positive | Positive_clone | M04G12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5214 | |||||||
| 4908 | |||||||||
| 5548 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00029058 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
