WormBase Tree Display for CDS: F47H4.2b
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| F47H4.2b | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F47H4 | |||
| Structure | Source_exons | 1 | 14 | |||
| 67 | 784 | |||||
| 834 | 1097 | |||||
| 1300 | 1340 | |||||
| 2856 | 3585 | |||||
| 3634 | 3897 | |||||
| 5590 | 5693 | |||||
| 5739 | 6432 | |||||
| 6479 | 6748 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | B3WFZ1 | ||
| UniProt | UniProtAcc | B3WFZ1 | ||||
| UniProt_GCRP | UniProtAcc | B3WFZ1 | ||||
| AlphaFold | entry | B3WFZ1 | ||||
| NCBI_protein | GI_number | GI:358246491 | ||||
| TREEFAM | TREEFAM_ID | TF322099 | ||||
| Protein_id | CHROMOSOME_V | CAQ76477 | 2 | |||
| DB_remark | contains similarity to Pfam domain PF01827 (FTH domain); contains similarity to Interpro domain IPR002900 (Domain of unknown function DUF38/FTH, Caenorhabditis species) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Microarray_results_evidence | V_17358829 | ||||
| Visible | Gene | WBGene00009835 | ||||
| Corresponding_transcript | F47H4.2b.1 | |||||
| Corresponding_protein | CE46710 | |||||
| Corresponding_PCR_product | cenix:79-f1 | |||||
| mv_F47H4.2 | ||||||
| sjj_F47H4.2 | ||||||
| smd_F47H4.2 | ||||||
| Corresponding_oligo_set (17) | ||||||
| Matching_cDNA | male_Nanopore_Roach_124905 | Inferred_automatically | transcript_builder.pl | |||
| L1_Nanopore_Li_277476 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_312874 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_126456 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG5911|c2_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| FM251767 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_220932 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG5911|c0_g2_i1 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00047702 | |||||
| WBRNAi00015219 | ||||||
| Microarray_results (21) | ||||||
| Brief_identification | DUF38 domain-containing protein | Accession_evidence | UniProt | TR:B3WFZ1 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 19 Oct 2011 00:00:00 | WBPerson4025 | ||||
| Remark | [080605 gw3] Created this isoform based on the tiling array expression data. This isoform may not be valid as there is currently no transcript data to justify it, but the tiling array data does look reasonable. | Microarray_results_evidence | V_17358829 | |||
| Curator_confirmed | WBPerson4025 | |||||
| [111019 gw3] Changed the fifth intron's donor splice site based on the Hillier RNASeq data. Our RNASeq intron splice data does not support any intron in this region. | From_analysis | RNASeq_Hillier_elegans | ||||
| Method | curated |
