WormBase Tree Display for Gene: WBGene00009835
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WBGene00009835 | SMap | S_parent | Sequence | F47H4 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | Sequence_name | F47H4.2 | |||||||
Molecular_name | F47H4.2a | ||||||||
F47H4.2a.1 | |||||||||
CE37016 | |||||||||
F47H4.2b | |||||||||
CE46710 | |||||||||
F47H4.2b.1 | |||||||||
Other_name | CELE_F47H4.2 | Accession_evidence | NDB | BX284605 | |||||
Public_name | F47H4.2 | ||||||||
DB_info | Database | AceView | gene | 5R839 | |||||
WormQTL | gene | WBGene00009835 | |||||||
WormFlux | gene | WBGene00009835 | |||||||
NDB | locus_tag | CELE_F47H4.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00009835|UniProtKB=B3WFZ1 | |||||||
family | PTHR23014 | ||||||||
NCBI | gene | 180150 | |||||||
RefSeq | protein | NM_001136426.5 | |||||||
NM_074995.8 | |||||||||
TREEFAM | TREEFAM_ID | TF322099 | |||||||
TrEMBL | UniProtAcc | B3WFZ1 | |||||||
O45527 | |||||||||
UniProt_GCRP | UniProtAcc | B3WFZ1 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Allele (121) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog | WBGene00056629 | Caenorhabditis remanei | From_analysis | TreeFam | |||||
WBGene00027443 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
WBGene00039349 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
WBGene00034515 | Caenorhabditis briggsae | From_analysis | Inparanoid_8 | ||||||
WBGene00061051 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||||
WBGene00081970 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||||
chrV_pilon.g17435 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Paralog (27) | |||||||||
Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enriched in several structures, including ABalaaaarl; ABalaaaarr; ABplaapaaa; ABplpaaaaa; and interfacial epithelial cell based on single-cell RNA-seq and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by sixteen chemicals including Tunicamycin; 4-bromodiphenyl ether; and Alovudine based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Domain of unknown function DUF38/FTH, Caenorhabditis species and FTH domain. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F47H4.2a | |||||||
F47H4.2b | |||||||||
Corresponding_CDS_history | F47H4.2:wp128 | ||||||||
F47H4.2b:wp229 | |||||||||
Corresponding_transcript | F47H4.2a.1 | ||||||||
F47H4.2b.1 | |||||||||
Associated_feature | WBsf647654 | ||||||||
WBsf662179 | |||||||||
WBsf1002644 | |||||||||
WBsf1002645 | |||||||||
WBsf1021264 | |||||||||
WBsf1021265 | |||||||||
WBsf1021266 | |||||||||
Experimental_info | RNAi_result | WBRNAi00047702 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00015219 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1151539 | ||||||||
Expr2003870 | |||||||||
Expr2022093 | |||||||||
Drives_construct | WBCnstr00031882 | ||||||||
Construct_product | WBCnstr00031882 | ||||||||
Microarray_results (21) | |||||||||
Expression_cluster (208) | |||||||||
Interaction | WBInteraction000260077 | ||||||||
WBInteraction000566997 | |||||||||
Map_info | Positive | Positive_clone | F47H4 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
Interpolated_map_position | V | 12.8896 | |||||||
Reference | WBPaper00012854 | ||||||||
Method | Gene |