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WormBase Tree Display for Gene: WBGene00009835

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Name Class

WBGene00009835SMapS_parentSequenceF47H4
IdentityVersion1
NameSequence_nameF47H4.2
Molecular_nameF47H4.2a
F47H4.2a.1
CE37016
F47H4.2b
CE46710
F47H4.2b.1
Other_nameCELE_F47H4.2Accession_evidenceNDBBX284605
Public_nameF47H4.2
DB_infoDatabaseAceViewgene5R839
WormQTLgeneWBGene00009835
WormFluxgeneWBGene00009835
NDBlocus_tagCELE_F47H4.2
PanthergeneCAEEL|WormBase=WBGene00009835|UniProtKB=B3WFZ1
familyPTHR23014
NCBIgene180150
RefSeqproteinNM_001136426.5
NM_074995.8
TREEFAMTREEFAM_IDTF322099
TrEMBLUniProtAccB3WFZ1
O45527
UniProt_GCRPUniProtAccB3WFZ1
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:50WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (121)
RNASeq_FPKM (74)
OrthologWBGene00056629Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00027443Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00039349Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00034515Caenorhabditis briggsaeFrom_analysisInparanoid_8
WBGene00061051Caenorhabditis remaneiFrom_analysisInparanoid_8
WBGene00081970Caenorhabditis remaneiFrom_analysisInparanoid_8
chrV_pilon.g17435Caenorhabditis elegansFrom_analysisWormBase-Compara
Paralog (27)
Structured_descriptionConcise_descriptionThis gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.Paper_evidenceWBPaper00012854
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionEnriched in several structures, including ABalaaaarl; ABalaaaarr; ABplaapaaa; ABplpaaaaa; and interfacial epithelial cell based on single-cell RNA-seq and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by sixteen chemicals including Tunicamycin; 4-bromodiphenyl ether; and Alovudine based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Domain of unknown function DUF38/FTH, Caenorhabditis species and FTH domain.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF47H4.2a
F47H4.2b
Corresponding_CDS_historyF47H4.2:wp128
F47H4.2b:wp229
Corresponding_transcriptF47H4.2a.1
F47H4.2b.1
Associated_featureWBsf647654
WBsf662179
WBsf1002644
WBsf1002645
WBsf1021264
WBsf1021265
WBsf1021266
Experimental_infoRNAi_resultWBRNAi00047702Inferred_automaticallyRNAi_primary
WBRNAi00015219Inferred_automaticallyRNAi_primary
Expr_patternExpr1151539
Expr2003870
Expr2022093
Drives_constructWBCnstr00031882
Construct_productWBCnstr00031882
Microarray_results (21)
Expression_cluster (208)
InteractionWBInteraction000260077
WBInteraction000566997
Map_infoPositivePositive_cloneF47H4Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionV12.8896
ReferenceWBPaper00012854
MethodGene