WormBase Tree Display for CDS: EGAP1.3
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| EGAP1.3 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | EGAP1 | |||
| Structure | Source_exons | 1 | 78 | |||
| 200 | 387 | |||||
| 590 | 655 | |||||
| 3728 | 3875 | |||||
| 4072 | 4207 | |||||
| 4252 | 4592 | |||||
| 4875 | 5128 | |||||
| 5532 | 5886 | |||||
| DB_info | Database | KEGG | KEGG_id | 3.4.24.- | ||
| SwissProt | UniProtAcc | G5EGM1 | ||||
| UniProt | UniProtAcc | G5EGM1 | ||||
| UniProt_GCRP | UniProtAcc | G5EGM1 | ||||
| AlphaFold | entry | G5EGM1 | ||||
| NCBI_protein | GI_number | GI:373254083 | ||||
| Protein_id | CHROMOSOME_III | CCD65979 | 1 | |||
| DB_remark | ZMP-1 protein; contains similarity to Pfam domains PF00413 (Matrixin), PF01471 (Putative peptidoglycan binding domain); contains similarity to Interpro domains IPR024079 (Metallopeptidase, catalytic domain superfamily), IPR021190 (Peptidase M10A), IPR018487 (Hemopexin-like repeats), IPR036375 (Hemopexin-like domain superfamily), IPR002477 (Peptidoglycan binding-like), IPR036365 (PGBD-like superfamily), IPR006026 (Peptidase, metallopeptidase), IPR001818 (Peptidase M10, metallopeptidase) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00006987 | ||||
| Corresponding_transcript | EGAP1.3.1 | |||||
| Corresponding_protein | CE30930 | |||||
| Corresponding_PCR_product | TH:314E9 | |||||
| cenix:314-e9 | ||||||
| mv_BAA28353 | ||||||
| sjj_C28H8.1 | ||||||
| Corresponding_oligo_set (16) | ||||||
| Matching_cDNA (14) | ||||||
| RNAi_result | WBRNAi00028231 | |||||
| WBRNAi00114621 | ||||||
| WBRNAi00011309 | ||||||
| WBRNAi00005962 | ||||||
| WBRNAi00076175 | ||||||
| WBRNAi00107794 | ||||||
| WBRNAi00089025 | ||||||
| WBRNAi00041425 | ||||||
| WBRNAi00061775 | ||||||
| Microarray_results (16) | ||||||
| Brief_identification | Matrix metalloproteinase-A | Accession_evidence | UniProt | SP:G5EGM1 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
