WormBase Tree Display for CDS: CBG15755
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CBG15755 | SMap | S_parent | Sequence | cb25.fpc4030a2 | |
---|---|---|---|---|---|
Structure | Source_exons | 1 | 61 | ||
592 | 788 | ||||
1898 | 2025 | ||||
2795 | 3026 | ||||
3733 | 4383 | ||||
5465 | 5659 | ||||
5778 | 5846 | ||||
DB_info | Database | UniProt | UniProtAcc | A8XMQ1 | |
UniProtId | A8XMQ1_CAEBR | ||||
TrEMBL | UniProtAcc | A8XMQ1 | |||
UniProt_GCRP | UniProtAcc | A8XMQ1 | |||
TREEFAM | TREEFAM_ID | TF314688 | |||
Protein_id | cb25.fpc4030a2 | CAP33927 | 1 | ||
DB_remark | CBR-UNC-25 protein; contains similarity to Pfam domain PF00282 (Pyridoxal-dependent decarboxylase conserved domain); contains similarity to Interpro domains IPR002129 (Pyridoxal phosphate-dependent decarboxylase), IPR015424 (Pyridoxal phosphate-dependent transferase), IPR015421 (Pyridoxal phosphate-dependent transferase, major domain) | ||||
Origin | From_laboratory | CB | |||
Species | Caenorhabditis briggsae | ||||
Properties | Coding | CDS | |||
Prediction_status | Partially_confirmed | ||||
Visible | Gene | WBGene00035897 | |||
Corresponding_transcript | CBG15755.1 | ||||
Corresponding_protein | CBP03839 | ||||
Corresponding_oligo_set | GPL8303_CB6_WBGene00035897_A | ||||
GPL8303_CB6_WBGene00035897_B | |||||
GPL14143_CBG15755_1142-1201_0.942_1_A | |||||
Matching_cDNA | briggsae_GG4966|c1_g1_i1 | Inferred_automatically | transcript_builder.pl | ||
Microarray_results | GPL8303_CB6_WBGene00035897_A | ||||
GPL8303_CB6_WBGene00035897_B | |||||
GPL14143_CBG15755_1142-1201_0.942_1_A | |||||
RNASeq_FPKM (9) | |||||
Last_reviewed | 28 Jun 2018 15:24:14 | WBPerson4025 | |||
Remark | [gffnote] orthologous to Y37D8A.23 by best mutual match (eval=0) ; Ortholog Y37D8A.23 ; Supported_by_ortholog ; Supported_by_paralogs ; Supported_by_multiple_predictions ; Brigpep BP:CBP03839 ; Gene WBGene00035897 | ||||
[20080722 tb] Modified based on Jigsaw gene ContigchrIII.briggsae.jigsaw.115 | |||||
[180628 gw3] This CDS has been inspected and looks satisfactory. | Curator_confirmed | WBPerson4025 | |||
From_analysis | RNASeq | ||||
Method | curated |