WormBase Tree Display for CDS: C41C4.5d
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| C41C4.5d | SMap | S_parent | Sequence | C41C4 | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (13) | |||||
| DB_info | Database | TrEMBL | UniProtAcc | H2FLF8 | ||
| UniProt | UniProtAcc | H2FLF8 | ||||
| AlphaFold | entry | H2FLF8 | ||||
| NCBI_protein | GI_number | GI:371570787 | ||||
| Protein_id | CHROMOSOME_II | CCF23432 | 1 | |||
| DB_remark | UNC-105 protein; contains similarity to Pfam domain PF00858 (Amiloride-sensitive sodium channel); contains similarity to Interpro domains IPR001873 (Epithelial sodium channel), IPR004726 (Degenerin) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | From_analysis | RNASeq_Hillier_elegans | ||||
| Visible | Gene | WBGene00006832 | ||||
| Corresponding_transcript | C41C4.5d.1 | |||||
| Corresponding_protein | CE46902 | |||||
| Corresponding_PCR_product | cenix:173-d12 | |||||
| cenix:203-d4 | ||||||
| mv_C41C4.4 | ||||||
| mv_C41C4.5 | ||||||
| sjj_C41C4.5 | ||||||
| Corresponding_oligo_set (18) | ||||||
| Matching_cDNA | adult_Nanopore_Roach_104974 | |||||
| L2_Nanopore_Roach_98532 | ||||||
| L2_Nanopore_Roach_39056 | ||||||
| L1_Nanopore_Roach_101500 | ||||||
| L1_Nanopore_Roach_69691 | ||||||
| L2_Nanopore_Roach_100427 | ||||||
| elegans_PE_SS_GG7663|c8_g2_i1 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00029717 | |||||
| WBRNAi00011833 | ||||||
| WBRNAi00042279 | ||||||
| WBRNAi00090191 | ||||||
| WBRNAi00109150 | ||||||
| WBRNAi00089804 | ||||||
| WBRNAi00042278 | ||||||
| WBRNAi00090032 | ||||||
| WBRNAi00090350 | ||||||
| Microarray_results (19) | ||||||
| Brief_identification | Degenerin-like protein unc-105 | Accession_evidence | UniProt | TR:H2FLF8 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 06 Dec 2011 00:00:00 | WBPerson1983 | ||||
| Remark | [111205 pad] Gene model created based on RNASeq and Mass spec peptide data supplying evidence that the former 2 genes should be merged. This locus appears to have a 5' Transcript population with and internal 3' UTR and a 3' Transcript population where the 5' end can be optionally clipped/spliced off when using trans-splicing or novel exons. As well as these on-overlapping populations there is also evidence for full length transcripts that join the transcript populations together. This scenario is becoming more and more common in the C. elegans gene set. | Curator_confirmed | WBPerson1983 | |||
| From_analysis | RNASeg_Hillier_elegans | |||||
| Mass_spec_evidence | MSP:MCVCVCVSEETPRPIESNQITK | |||||
| Associated_feature | WBsf124948 | |||||
| Method | curated |
