WormBase Tree Display for Sequence: C17D12
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| C17D12 | DNA | C17D12 | 41552 | |||
|---|---|---|---|---|---|---|
| SMap | S_child | Gene_child (21) | ||||
| CDS_child (179) | ||||||
| Transcript (25) | ||||||
| PCR_product (24) | ||||||
| Allele (835) | ||||||
| Oligo_set | Aff_C17D12.1A | 30248 | 33312 | |||
| Aff_C17D12.1B | 28879 | 28995 | ||||
| Aff_C17D12.2 | 15571 | 18496 | ||||
| Aff_C17D12.4 | 9955 | 9288 | ||||
| Aff_C17D12.5 | 3836 | 4467 | ||||
| Aff_C17D12.6 | 884 | 140 | ||||
| Aff_C17D12.7 | 22383 | 21784 | ||||
| Aff_C17D12.3 | 35162 | 33946 | ||||
| Feature_object (316) | ||||||
| Feature_data | C17D12:Polysome | 1 | 41552 | |||
| C17D12:TranscriptionallyActiveRegion | 1 | 41552 | ||||
| C17D12:ChIPSeqTF | 1 | 41552 | ||||
| C17D12:TRF | 1 | 41552 | ||||
| C17D12:Dust | 1 | 41552 | ||||
| C17D12:inverted | 1 | 41552 | ||||
| Homol_data (20) | ||||||
| Structure | From | Source | CHROMOSOME_I | |||
| Overlap_right | Y47H9A | 41446 | ||||
| Overlap_left | F15D3 | |||||
| Clone_left_end | C17D12 | 1 | ||||
| Clone_right_end | F15D3 | 4 | ||||
| C17D12 | 41552 | |||||
| DB_info | Database | EMBL | NDB_AC | Z81473 | ||
| NDB_SV | Z81473.3 | |||||
| DB_remark | [980327 dl] : Linked to F15D3, o/l is by Sau3AI site only, confirmed using PCR by Andrew Sinson (Emory University). | |||||
| [121025] Sequence correction: SNP 0 bases @ 20648 | ||||||
| Keyword | HTG | |||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
| Origin | From_author | White S | ||||
| From_laboratory | HX | |||||
| Date_directory | 990228 | |||||
| Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00000001 | |||||
| Visible | Clone | C17D12 | ||||
| Properties | Genomic_canonical | |||||
| Checksum | MD5 | 6c1e13223f4adec9631bfdc595b7677a | ||||
| Status | Finished | 28 Feb 1999 00:00:00 | ||||
| Submitted | 06 Nov 1996 00:00:00 | |||||
| Annotated | 01 Jan 1980 00:00:00 | |||||
| Map | Sequence-I | Ends | Left | 5788 | ||
| Right | 5815 | |||||
| Interpolated_map_position | I | 9.29712 | ||||
| Assembly_tags | annotation | 23053 | 23080 | [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Comment | ||
| 23444 | 23444 | [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Comment Divergence with YAC data (T) | ||||
| Finished Right | 41552 | 41549 | C17D12 | |||
| Clone right end | 4 | 1 | F15D3 Overlaps at GATC site | |||
| 41552 | 41549 | C17D12 | ||||
| Clone left end | 1 | 4 | C17D12 | |||
| comment | 5572 | 5552 | ?This shouldn't go here but it fits. | |||
| 20098 | 20089 | ?do long term off this read | ||||
| 20456 | 20461 | ?Named wrong. | ||||
| Warning | 21233 | 21232 | "POSSIBLY VECTOR: puc18 299 248 2686" | |||
| 22436 | 22436 | "POSSIBLY VECTOR: puc18 2623 2578 2686" | ||||
| Finished Left | 1 | 4 | C17D12 | |||
| Method | Genomic_canonical |
