WormBase Tree Display for Sequence: C17D12

C17D12 DNA: C17D12 41552
  SMap: S_child: Gene_child (21)
      CDS_child: C17D12.1a 28879 33312
        C17D12.1b 29249 33312
        C17D12.2:wp76 14120 18496
        C17D12.2:wp103 9475 18496
        C17D12.2:wp114 9475 18496
        C17D12.2a 9475 18496
        C17D12.2b 9475 18496
        C17D12.2c 14120 18496
        C17D12.2d 14120 18496
        C17D12.3 37436 33989
        C17D12.3:wp187 37436 33946
        C17D12.4:wp77 9955 9288
        C17D12.5 3424 4467
        C17D12.5:wp77 3836 4467
        C17D12.7 28474 21784
        C17D12.7:wp230 28474 21784
        C17D12.9 39072 38749
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g14n11_x24_I_p 28879 33246
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g105_x24_I_p 11444 14178
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g76_x24_I_p 14186 16123
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g15n11_x24_I_m 28474 21787
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g99_x24_I_p 17502 18409
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g29n11_x24_I_p 29249 29289
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g37n11_x24_I_p 32327 32351
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g78_x24_I_p 9517 11192
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g70_x24_I_m 28390 28252
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g24n11_x24_I_p 28879 33243
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g65_x24_I_m 27341 23676
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g30_x24_I_p 9475 18493
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g88_x24_I_m 22098 21787
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g66_x24_I_m 28000 27771
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g23n11_x24_I_p 28879 33243
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g92_x24_I_m 28089 27959
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g86_x24_I_m 28317 28198
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g73_x24_I_m 27949 27738
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g74_x24_I_m 27341 22270
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g28n11_x24_I_p 9475 18493
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g28_x24_I_p 11385 17519
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g15n11_x24_I_p 28879 33243
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g26n11_x24_I_p 9475 11168
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g93_x24_I_m 27737 27363
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g110_x24_I_m 27251 24905
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g76_x24_I_m 27926 27739
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g84_x24_I_m 24140 23760
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g101_x24_I_m 24850 24156
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g96_x24_I_m 23702 22363
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g46_x24_I_p 18369 18487
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g48_x24_I_p 18419 18487
        RNASEQ_embryo_him-8_20dC_post-L1_g50_x24_I_p 19018 19109
        RNASEQ_embryo_him-8_20dC_post-L1_g52_x24_I_m 27341 21787
        RNASEQ_embryo_him-8_20dC_post-L1_g35n11_x24_I_p 9475 11477
        RNASEQ_embryo_him-8_20dC_post-L1_g11n11_x24_I_p 28879 33243
        RNASEQ_embryo_him-8_20dC_post-L1_g34_x24_I_p 14120 18493
        RNASEQ_embryo_him-8_20dC_post-L1_g51n11_x24_I_m 28474 28069
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g65n11_x24_I_m 28474 21787
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g94_x24_I_p 9499 11159
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g15_x24_I_p 3424 4464
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g30n11_x24_I_p 32327 33243
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g80_x24_I_p 11385 17546
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g24n11_x24_I_p 28879 33240
        RNASEQ_L4_soma_JK1107_no_DNaseI_g105_x24_I_p 3836 3995
        RNASEQ_L4_soma_JK1107_no_DNaseI_g118_x24_I_p 14186 14281
        RNASEQ_L4_soma_JK1107_no_DNaseI_g16n11_x24_I_p 28879 33243
        RNASEQ_L4_soma_JK1107_no_DNaseI_g173_x24_I_m 24140 23808
        RNASEQ_L4_soma_JK1107_no_DNaseI_g148_x24_I_p 16106 17480
        RNASEQ_L4_soma_JK1107_no_DNaseI_g83_x24_I_m 27341 25004
        RNASEQ_L4_soma_JK1107_no_DNaseI_g74_x24_I_p 14763 15504
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g44_x24_I_p 13217 18493
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g51n11_x24_I_m 28474 21787
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g59n11_x24_I_p 11385 11477
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g30n11_x24_I_p 28879 33243
        RNASEQ_early_embryo_g48_x24_I_p 19018 19109
        RNASEQ_early_embryo_g26n11_x24_I_p 28879 33243
        RNASEQ_early_embryo_g29_x24_I_p 14120 18493
        RNASEQ_early_embryo_g26n11s2k50_x24_I_p 30278 30365
        RNASEQ_early_embryo_g28n11e4k82_x24_I_m 27390 27228
        RNASEQ_early_embryo_g23n11_x24_I_m 24140 21787
        RNASEQ_early_embryo_g28n11_x24_I_m 28317 24080
        RNASEQ_early_embryo_g58n11_x24_I_m 28474 28066
        RNASEQ_early_embryo_g56n11_x24_I_p 9475 11477
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g25n11_x24_I_p 28879 33243
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g30n11_x24_I_p 19018 19109
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g45n11_x24_I_m 28474 21787
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g12n11_x24_I_p 9475 18493
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g14n11_x24_I_p 28879 33246
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g39_x24_I_p 11385 18493
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g52_x24_I_m 27341 22294
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g98_x24_I_m 27341 27252
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g33n11_x24_I_p 9475 11477
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g117_x24_I_p 14120 18493
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g69_x24_I_m 24850 23613
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g67_x24_I_m 28317 28195
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g78_x24_I_m 28104 27926
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g114_x24_I_m 27815 27687
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g11n11_x24_I_p 28879 33240
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g101_x24_I_p 14763 15519
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g60_x24_I_m 28317 22378
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g11n11_x24_I_p 28879 33243
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g92_x24_I_p 14120 14564
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g120_x24_I_p 14763 15435
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g118_x24_I_m 1651 1077
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g135_x24_I_m 3105 2930
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g125_x24_I_p 14120 14251
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g59_x24_I_m 24850 22423
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g81_x24_I_m 2398 1673
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g80_x24_I_p 4047 4404
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g96_x24_I_m 2886 2741
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g85_x24_I_m 27982 27345
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g82_x24_I_m 28317 27989
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g31_x24_I_p 29249 33240
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g91_x24_I_m 1073 794
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g97_x24_I_m 342 182
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g111_x24_I_p 14186 14281
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g19n11_x24_I_p 28879 33246
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g102_x24_I_p 4047 4404
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g91_x24_I_p 11161 11466
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g78_x24_I_p 14538 18427
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g27n11_x24_I_m 28474 21787
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g63_x24_I_p 3424 3995
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g66_x24_I_p 14120 18487
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g63_x24_I_p 3424 3862
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g29n11_x24_I_m 28474 21787
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g21n11_x24_I_p 28879 33240
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g67_x24_I_p 3872 3995
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g88_x24_I_p 9475 11144
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g90_x24_I_p 11385 11477
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g92_x24_I_p 14571 15459
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g106_x24_I_p 11417 14229
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g16n11_x24_I_p 28879 33243
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g104_x24_I_p 14234 14537
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g90_x24_I_p 18419 18493
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g34n11_x24_I_m 28474 21790
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g123_x24_I_p 16106 18493
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g29n11_x24_I_m 28474 21787
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g62n11_x24_I_p 9475 18493
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g21n11_x24_I_p 28879 33243
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g67n11_x24_I_p 11385 11477
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g112_x24_I_m 370 174
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g121_x24_I_m 3220 2921
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g15n11_x24_I_p 28879 33243
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g70_x24_I_p 3836 4464
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g44_x24_I_m 28390 21787
        C17D12.gc1 3220 140
        C17D12.gc2 3424 13007
        C17D12.gc3 14120 19251
        C17D12.gc4 28474 21784
        C17D12.gc5 28879 33312
        C17D12.gc6 39072 33960
        C17D12.gc7 40288 41505
        ContigI.elegans.jigsaw.2221.mRNA2221 9228 18878
        ContigI.elegans.jigsaw.2223.mRNA2223 28698 33885
        ContigI.elegans.jigsaw.2220.mRNA2220 3395 4506
        ContigI.elegans.jigsaw.2224.mRNA2224 37477 33928
        ContigI.elegans.jigsaw.2222.mRNA2222 28507 21148
        AG1201_C17D12.6.T1 3220 1787
        AG1201_C17D12.5.T1 3424 4467
        AG1201_C17D12.5.T2 3836 4467
        AG1201_C17D12.2.T9 9475 11477
        AG1201_C17D12.2.T4 9475 11513
        AG1201_C17D12.2.T6 9475 16165
        AG1201_C17D12.2.T10 9475 17741
        AG1201_C17D12.2.T5 9475 18496
        AG1201_C17D12.2.T8 9475 18496
        AG1201_C17D12.2.T12 9475 19112
        AG1201_C17D12.2.T7 9475 19112
        AG1201_C17D12.2.T3 9554 18496
        AG1201_C17D12.2.T2 11385 18496
        AG1201_C17D12.2.T13 13217 18496
        AG1201_C17D12.2.T1 14120 18496
        AG1201_C17D12.7.T1 28531 21784
        AG1201_RIT1P.443.T1 26494 26595
        AG1201_C17D12.1.T2 28879 33312
        AG1201_C17D12.1.T1 29249 33312
        AG1201_C17D12.3.T6 36168 34279
        AG1201_C17D12.3.T5 36168 34419
        AG1201_C17D12.3.T3 36911 36220
        AG1201_C17D12.3.T2 37436 37194
        AG1201_C17D12.3.T1 39072 37436
        AG1201_Y47H9A.1.T3 40288 40537
      Transcript (25)
      PCR_product (24)
      Allele (835)
      Oligo_set: Aff_C17D12.1A 30248 33312
        Aff_C17D12.1B 28879 28995
        Aff_C17D12.2 15571 18496
        Aff_C17D12.4 9955 9288
        Aff_C17D12.5 3836 4467
        Aff_C17D12.6 884 140
        Aff_C17D12.7 22383 21784
        Aff_C17D12.3 35162 33946
      Feature_object (316)
      Feature_data: C17D12:Polysome 1 41552
        C17D12:TranscriptionallyActiveRegion 1 41552
        C17D12:ChIPSeqTF 1 41552
        C17D12:TRF 1 41552
        C17D12:Dust 1 41552
        C17D12:inverted 1 41552
      Homol_data (20)
  Structure: From: Source: CHROMOSOME_I
    Overlap_right: Y47H9A 41446
    Overlap_left: F15D3
    Clone_left_end: C17D12 1
    Clone_right_end: F15D3 4
      C17D12 41552
  DB_info: Database: EMBL NDB_AC Z81473
        NDB_SV Z81473.3
    DB_remark: [980327 dl] : Linked to F15D3, o/l is by Sau3AI site only, confirmed using PCR by Andrew Sinson (Emory University).
      [121025] Sequence correction: SNP 0 bases @ 20648
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: White S
    From_laboratory: HX
    Date_directory: 990228
    Species: Caenorhabditis elegans
    Strain: WBStrain00000001
  Visible: Clone: C17D12
  Properties: Genomic_canonical
    Checksum: MD5: 6c1e13223f4adec9631bfdc595b7677a
    Status: Finished: 28 Feb 1999 00:00:00
      Submitted: 06 Nov 1996 00:00:00
      Annotated: 01 Jan 1980 00:00:00
  Map: Sequence-I Ends: Left: 5788
        Right: 5815
  Interpolated_map_position: I 9.29712
  Assembly_tags: annotation 23053 23080 [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Comment
      23444 23444 [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Comment Divergence with YAC data (T)
    Finished Right 41552 41549 C17D12
    Clone right end 4 1 F15D3 Overlaps at GATC site
      41552 41549 C17D12
    Clone left end 1 4 C17D12
    comment 5572 5552 ?This shouldn't go here but it fits.
      20098 20089 ?do long term off this read
      20456 20461 ?Named wrong.
    Warning 21233 21232 "POSSIBLY VECTOR: puc18 299 248 2686"
      22436 22436 "POSSIBLY VECTOR: puc18 2623 2578 2686"
    Finished Left 1 4 C17D12
  Method: Genomic_canonical