WormBase Tree Display for Variation: WBVar02127987
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WBVar02127987 | Evidence | Paper_evidence | WBPaper00045317 | |||
---|---|---|---|---|---|---|
Name | Public_name | h7131 | ||||
Other_name | CE18170:p.Pro437= | |||||
T02E1.5a.1:c.267+1193C>T | ||||||
T02E1.3b.1:c.1416G>A | ||||||
T02E1.5b.1:c.273+1193C>T | ||||||
CE18171:p.Pro472= | ||||||
T02E1.3c.1:c.1311G>A | ||||||
CE32481:p.Pro439= | ||||||
T02E1.3a.1:c.1317G>A | ||||||
HGVSg | CHROMOSOME_I:g.8216822G>A | |||||
Sequence_details | SMap | S_parent | Sequence | T02E1 | ||
Flanking_sequences | AGGGACCTCAACATCCGTTTGCGGCTCTTCTCTCACCACC | GAGATCTCGGAGTCCTTGCTCCCACCTGATGACTCGTTTT | ||||
Mapping_target | CHROMOSOME_I | |||||
Source_location | 200 | CHROMOSOME_I | 8216815 | 8216815 | ||
Type_of_mutation | Substitution | G | A | |||
SeqStatus | Sequenced | |||||
Variation_type | Allele | |||||
Origin | Species | Caenorhabditis elegans | ||||
Strain | WBStrain00023702 | |||||
Laboratory | KR | |||||
Analysis | WGS_Rose | |||||
Status | Live | |||||
Affects | Gene | WBGene00011376 | ||||
WBGene00000967 | ||||||
Transcript | T02E1.5b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | |||||
HGVSc | T02E1.5b.1:c.273+1193C>T | |||||
Intron_number | 1/6 | |||||
T02E1.3c.1 | VEP_consequence | synonymous_variant | ||||
VEP_impact | LOW | |||||
HGVSc | T02E1.3c.1:c.1311G>A | |||||
HGVSp | CE18170:p.Pro437= | |||||
cDNA_position | 1345 | |||||
CDS_position | 1311 | |||||
Protein_position | 437 | |||||
Exon_number | 9/12 | |||||
Codon_change | ccG/ccA | |||||
Amino_acid_change | P | |||||
T02E1.5a.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | T02E1.5a.1:c.267+1193C>T | |||||
Intron_number | 2/7 | |||||
T02E1.3b.1 | VEP_consequence | synonymous_variant | ||||
VEP_impact | LOW | |||||
HGVSc | T02E1.3b.1:c.1416G>A | |||||
HGVSp | CE18171:p.Pro472= | |||||
cDNA_position | 1416 | |||||
CDS_position | 1416 | |||||
Protein_position | 472 | |||||
Exon_number | 8/10 | |||||
Codon_change | ccG/ccA | |||||
Amino_acid_change | P | |||||
T02E1.3a.1 | VEP_consequence | synonymous_variant | ||||
VEP_impact | LOW | |||||
HGVSc | T02E1.3a.1:c.1317G>A | |||||
HGVSp | CE32481:p.Pro439= | |||||
cDNA_position | 1345 | |||||
CDS_position | 1317 | |||||
Protein_position | 439 | |||||
Exon_number | 9/12 | |||||
Codon_change | ccG/ccA | |||||
Amino_acid_change | P | |||||
Reference | WBPaper00040589 | |||||
WBPaper00000975 | ||||||
WBPaper00003985 | ||||||
WBPaper00000699 | ||||||
WBPaper00045317 | ||||||
Method | WGS_Rose |