WormBase Tree Display for Variation: WBVar02103933
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WBVar02103933 | Name | Public_name | WBVar02103933 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | cewivar00834256 | |||||||
Y105C5A.9b.1:c.168_173delinsAAACGC | ||||||||
CE50062:p.Asp56_Ter58delinsGluAsnAla | ||||||||
CE47955:p.Asp96_Ter98delinsGluAsnAla | ||||||||
Y105C5A.9a.1:c.288_293delinsAAACGC | ||||||||
HGVSg | CHROMOSOME_IV:g.15633393_15633398delinsAAACGC | |||||||
Sequence_details | SMap | S_parent | Sequence | Y105C5A | ||||
Flanking_sequences | TTCAAGATTCTCAGATCAACCGCGTGCGGA | ACAGACTGTCTCCGATTGGACCAAAGACCA | ||||||
Mapping_target | Y105C5A | |||||||
Source_location | 225 | CHROMOSOME_IV | 15633361 | 15633366 | From_analysis | Million_mutation_project_reanalysis | ||
Type_of_mutation | Insertion | AAACGC | ||||||
Deletion | ||||||||
SeqStatus | Sequenced | |||||||
Variation_type | Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||||
WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | ||||||
WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | ||||||
WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | ||||||
Laboratory | VC | |||||||
Analysis | Million_mutation_project_reanalysis | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00013634 | ||||||
Transcript | Y105C5A.9a.1 | VEP_consequence | stop_lost | |||||
VEP_impact | HIGH | |||||||
HGVSc | Y105C5A.9a.1:c.288_293delinsAAACGC | |||||||
HGVSp | CE47955:p.Asp96_Ter98delinsGluAsnAla | |||||||
cDNA_position | 287-293 | |||||||
CDS_position | 287-293 | |||||||
Protein_position | 96-98 | |||||||
Exon_number | 4/5 | |||||||
Codon_change | gATAACTAa/gAAAACGCa | |||||||
Amino_acid_change | DN*/ENA | |||||||
Y105C5A.9b.1 | VEP_consequence | stop_lost | ||||||
VEP_impact | HIGH | |||||||
HGVSc | Y105C5A.9b.1:c.168_173delinsAAACGC | |||||||
HGVSp | CE50062:p.Asp56_Ter58delinsGluAsnAla | |||||||
cDNA_position | 167-173 | |||||||
CDS_position | 167-173 | |||||||
Protein_position | 56-58 | |||||||
Exon_number | 3/3 | |||||||
Codon_change | gATAACTAa/gAAAACGCa | |||||||
Amino_acid_change | DN*/ENA | |||||||
Method | WGS_Flibotte |